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Probabilistic Inference of Biochemical Reactions in Microbial Communities from Metagenomic Sequences

, , and . PLoS Comput Biol, 9 (3): e1002981+ (Mar 21, 2013)
DOI: 10.1371/journal.pcbi.1002981

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Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis., and . CoRR, (2015)Automatic detection of subsystem/pathway variants in genome analysis., , , and . ISMB (Supplement of Bioinformatics), page 478-486. (2005)Integrated web service for improving alignment quality based on segments comparison., , , , and . BMC Bioinform., (2004)Protein Domain Embeddings for Fast and Accurate Similarity Search., , and . RECOMB, volume 14758 of Lecture Notes in Computer Science, page 421-424. Springer, (2024)Flexible structure alignment by chaining aligned fragment pairs allowing twists., and . ECCB, page 246-255. (2003)A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using l-Tuples., and . RECOMB, volume 6044 of Lecture Notes in Computer Science, page 535-549. Springer, (2010)Comparing Bacterial Communities Inferred from 16s Rrna Gene Sequencing and Shotgun Metagenomics., , , and . Pacific Symposium on Biocomputing, page 165-176. World Scientific Publishing, (2011)A Concurrent Subtractive Assembly Approach for Identification of Disease Associated Sub-metagenomes., , and . RECOMB, volume 10229 of Lecture Notes in Computer Science, page 18-33. (2017)Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins., , and . Pacific Symposium on Biocomputing, page 439-450. World Scientific, (2006)An Orfome Assembly Approach to Metagenomics Sequences Analysis., and . J. Bioinform. Comput. Biol., 7 (3): 455-471 (2009)