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CaverDock: A Novel Method for the Fast Analysis of Ligand Transport.

, , , , , , , and . IEEE ACM Trans. Comput. Biol. Bioinform., 17 (5): 1625-1638 (2020)

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CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures., , , , , , , , , and 5 other author(s). Bioinform., 30 (18): 2684-2685 (2014)EnzymeMiner: automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities., , , , , , , and . Nucleic Acids Res., 48 (Webserver-Issue): W104-W109 (2020)FireProtDB: database of manually curated protein stability data., , , , , , and . Nucleic Acids Res., 49 (Database-Issue): D319-D324 (2021)FireProt: web server for automated design of thermostable proteins., , , , , , , , and . Nucleic Acids Res., 45 (Webserver-Issue): W393-W399 (2017)CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels., , , , , , , , and . Bioinform., 35 (23): 4986-4993 (2019)sMolBoxes: Dataflow Model for Molecular Dynamics Exploration., , , , , , and . IEEE Trans. Vis. Comput. Graph., 29 (1): 581-590 (2023)sMolBoxes: Dataflow Model for Molecular Dynamics Exploration., , , , , , and . CoRR, (2022)FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants., , , , , , , , , and . PLoS Comput. Biol., (2015)PepSeA: Peptide Sequence Alignment and Visualization Tools to Enable Lead Optimization., , , , , , , , , and 6 other author(s). J. Chem. Inf. Model., 62 (5): 1259-1267 (2022)LoopGrafter: a web tool for transplanting dynamical loops for protein engineering., , , , , , , , , and 1 other author(s). Nucleic Acids Res., 50 (W1): 465-473 (2022)