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Constraint Maximal Inter-molecular Helix Lengths within RNA-RNA Interaction Prediction Improves Bacterial sRNA Target Prediction.

, , , , and . BIOINFORMATICS, page 131-140. SciTePress, (2019)978-989-758-353-7.

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A Complete Axiomatization of a Theory with Feature and Arity Constraints.. J. Log. Program., 24 (1&2): 37-71 (1995)A New Distance Measure of RNA Ensembles and Its Application to Phylogenetic Tree Construction., and . CIBCB, page 150-157. IEEE, (2005)Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chains., , , and . Algorithms Mol. Biol., 15 (1): 19 (2020)Freiburg RNA tools: a central online resource for RNA-focused research and teaching., , , , , , , , , and 12 other author(s). Nucleic Acids Res., 46 (Webserver-Issue): W25-W29 (2018)INFO-RNA - a server for fast inverse RNA folding satisfying sequence constraints., and . Nucleic Acids Res., 35 (Web-Server-Issue): 310-313 (2007)CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains., , , , , , , , and . Nucleic Acids Res., 42 (Webserver-Issue): 119-123 (2014)IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions., , and . Nucleic Acids Res., 45 (Webserver-Issue): W435-W439 (2017)Controlling Functional Uncertainty. CoRR, (1996)Using constraint programming for lattice protein folding.. German Conference on Bioinformatics, page 123. Oxford University Press, (1997)Excluding Symmetries in Constraint-Based Search., and . CP, volume 1713 of Lecture Notes in Computer Science, page 73-87. Springer, (1999)