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Parallel Algorithms for Mapping Short degenerate and Weighted DNA Sequences to a Reference genome.

, , and . Int. J. Found. Comput. Sci., 23 (2): 249-259 (2012)

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Property Suffix Array with Applications., , , and . LATIN, volume 10807 of Lecture Notes in Computer Science, page 290-302. Springer, (2018)Efficient Identification of k-Closed Strings., , , , , and . EANN, volume 744 of Communications in Computer and Information Science, page 583-595. Springer, (2017)GenMap: ultra-fast computation of genome mappability., , , and . Bioinform., 36 (12): 3687-3692 (2020)Approximate periods of strings., , , and . Theor. Comput. Sci., 262 (1): 557-568 (2001)Application and Algorithm: Maximal Motif Discovery for Biological Data in a Sliding Window., , , and . AIAI Workshops, volume 585 of IFIP Advances in Information and Communication Technology, page 213-224. Springer, (2020)Conservative String Covering of Indeterminate Strings., , , , and . Stringology, page 108-115. Prague Stringology Club, Department of Computer Science and Engineering, Faculty of Electrical Engineering, Czech Technical University in Prague, (2008)Implementation of a Swap Matching Algorithm Using a Graph Theoretic Model., , , and . BIRD, volume 13 of Communications in Computer and Information Science, page 446-455. Springer, (2008)Analysis of an Algorithm for Composition of Binary Quadratic Forms.. J. Algorithms, 3 (2): 157-159 (1982)GapMis-OMP: Pairwise Short-Read Alignment on Multi-core Architectures., , , and . AIAI (2), volume 382 of IFIP Advances in Information and Communication Technology, page 593-601. Springer, (2012)A Filter-Based Approach for Approximate Circular Pattern Matching., , , and . ISBRA, volume 9096 of Lecture Notes in Computer Science, page 24-35. Springer, (2015)