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The challenges of integrating multi-omic data sets., and . Nature chemical biology, 6 (11): 787--789 (November 2010)Systems Biology: Simulation of Dynamic Network States. Cambridge University Press, (Jun 30, 2011)Towards multidimensional genome annotation, , , and . Nature reviews. Genetics, (February 2006)A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology, , , , , and . BMC Systems Biology, 5 (1): 180+ (2011)Deciphering the regulatory codes in bacterial genomes, , and . Biotechnology Journal, (2011)Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states, , , , and . BMC Biology, 12 (1): 4+ (Jan 24, 2014)Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets, and . BMC Systems Biology, 1 (1): 26+ (2007)Determining the control circuitry of redox metabolism at the genome-scale., , , , , , , and . PLoS genetics, (April 2014)Mass Action Stoichiometric Simulation Models: Incorporating Kinetics and Regulation into Stoichiometric Models, and . 98 (2): 175--185 (Jan 20, 2010)Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.: Basic Concepts, Scientific and Practical Use, and . Appl. Environ. Microbiol., (1994)