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'Size leap' algorithm: an efficient extraction of the longest common motifs from a molecular sequence set. Application to the DNA sequence reconstruction., , and . Comput. Appl. Biosci., 7 (4): 509-513 (1991)Evolution of Recombination on an HIV-1 Derived Fitness Landscape., , , , , , , and . ALIFE, page 487. MIT Press, (2010)A web-based genotyping resource for viral sequences., , , , and . Nucleic Acids Res., 32 (Web-Server-Issue): 654-659 (2004)An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1., , , , , , , , , and . PLoS Comput. Biol., (2009)MASH: an interactive program for multiple alignment and consensus sequence construction for biological sequences., , , and . Comput. Appl. Biosci., 7 (2): 195-202 (1991)Database resources of the National Center for Biotechnology Information., , , , , , , and . Nucleic Acids Res., 28 (1): 10-14 (2000)MMDB: Entrez's 3D structure database., , , , , , , and . Nucleic Acids Res., 27 (1): 240-243 (1999)A method for delineating structurally homogeneous regions in protein sequences., and . Comput. Appl. Biosci., 8 (3): 255-260 (1992)