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Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples., , , , , , , , , and 1 other author(s). Briefings Bioinform., (2021)RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes., , , and . BIBM Workshops, page 118-123. IEEE Computer Society, (2011)VGA: A method for viral quasispecies assembly from ultra-deep sequencing data., , , , , and . ICCABS, page 1. IEEE Computer Society, (2014)ROP: Dumpster Diving in RNA-sequencing to Find the Source of 1 Trillion Reads Across Diverse Adult Human Tissues., , and . BCB, page 573. ACM, (2018)Telescope: an interactive tool for managing large scale analysis from mobile devices., , , , , , , and . CoRR, (2019)Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities., , , , , , , , , and 9 other author(s). CoRR, (2022)MetaFast: Enabling Fast Metagenomic Classification via Seed Counting and Edit Distance Approximation., , , , , , , and . CoRR, (2023)TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles., , and . IPDPS Workshops, page 217. IEEE, (2022)Poster: ViSpA: Viral spectrum assembling method., , , , , , and . ICCABS, page 234. IEEE Computer Society, (2011)Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations., , , , and . In Silico Biology, 11 (5-6): 251-261 (2012)