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RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.

, , , , , , and . Bioinform., 27 (2): 281-283 (2011)

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ACT: aggregation and correlation toolbox for analyses of genome tracks., , , , , , , , , and 1 other author(s). Bioinform., 27 (8): 1152-1154 (2011)RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries., , , , , , and . Bioinform., 27 (2): 281-283 (2011)Tiling array data analysis: a multiscale approach using wavelets., , and . BMC Bioinform., (2011)Assessing the need for sequence-based normalization in tiling microarray experiments., , and . Bioinform., 23 (8): 988-997 (2007)A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge., , , , , , , and . Bioinform., 22 (24): 3016-3024 (2006)Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors., , , , , , and . PLoS Comput. Biol., (2015)Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites., , , , , and . BSB, volume 3594 of Lecture Notes in Computer Science, page 28-29. Springer, (2005)VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment., , , , , , , , , and . Bioinform., 28 (17): 2267-2269 (2012)Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data., , , , , , , , , and 2 other author(s). PLoS Comput. Biol., (2011)Modeling ChIP Sequencing In Silico with Applications., , , , and . PLoS Comput. Biol., (2008)