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From de Bruijn Graphs to Rectangle Graphs for Genome Assembly., , , and . WABI, volume 7534 of Lecture Notes in Computer Science, page 249-261. Springer, (2012)dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes., , and . RECOMB, volume 8394 of Lecture Notes in Computer Science, page 265-279. Springer, (2014)De novo identification of repeat families in large genomes., , and . ISMB (Supplement of Bioinformatics), page 351-358. (2005)Reconstructing tumor amplisomes., and . ISMB/ECCB (Supplement of Bioinformatics), page 265-273. (2004)An Introduction to Bioinformatics Algorithms, and . MIT Press, Cambridge, MA, (2004)To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution)., and . SODA, page 304-313. ACM/SIAM, (1996)Colored de Bruijn Graphs and the Genome Halving Problem., and . IEEE ACM Trans. Comput. Biol. Bioinform., 4 (1): 98-107 (2007)Characterization of Multi-Charge Mass Spectra for Peptide Sequencing., , , and . APBC, page 109-119. Imperial College Press, London, (2006)Error correction of high-throughput sequencing datasets with non-uniform coverage., , , and . Bioinform., 27 (13): 137-141 (2011)Mutation-Tolerant Protein Identification by Mass Spectrometry., , and . J. Comput. Biol., 7 (6): 777-787 (2000)