peter.ralph | BibSonomy

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1Mathematical Annotation in R | Vistat
http://vis.supstat.com/2013/04/mathematical-annotation-in-r/
6 years ago by @peter.ralph
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R
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Rreference
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1California | TreeFlow
https://www.treeflow.info/california
6 years ago by @peter.ralph
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data_source
hydrology
tree_rings
data_sourcehydrologytree_rings
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1PublicLands.org | Oregon
http://publiclands.org/Get-Books-and-Maps.php?plicstate=OR
5 years ago by @peter.ralph
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maps
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1National Geologic Map Database
https://ngmdb.usgs.gov/Prodesc/proddesc_54147.htm
5 years ago by @peter.ralph
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GIS
data_source
GISdata_source
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1Seeing Theory - Basic Probability
https://seeing-theory.brown.edu/basic-probability/
5 years ago by @peter.ralph
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learning
probability
learningprobability
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1The Amateur Anthecologist: Wasps of Southern Oregon (2016)
https://www.amateuranthecologist.com/2017/01/wasps-of-2016.html
4 years ago by @peter.ralph
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identification
natural_history
wasps
identificationnatural_historywasps
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1Forest Inventory and Analysis National Program
https://www.fia.fs.fed.us/tools-data/index.php
3 years ago by @peter.ralph
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data_source
habitat
land_cover
maps
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1Oregon
https://wrcc.dri.edu/summary/Climsmor.html
2 years ago by @peter.ralph
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maps
weather
mapsweather
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1Indigenous Placenames in Northern California
https://irows.ucr.edu/cd/appendices/b6/b6app3.htm
a year ago by @peter.ralph
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wintu
wintu
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2DLMF: NIST Digital Library of Mathematical Functions
https://dlmf.nist.gov/
a year ago by @peter.ralph
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1On the Dynamics of Exploited Fish Populations
R. Beverton, and S. Holt. Springer Netherlands, (1957)
5 months ago by @peter.ralph
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Beverton-Holt
density-dependent_regulation
fisheries
original
parameter_estimation
population_dynamics
reaction-diffusion
Beverton-Holtdensity-dependent_regulationfisheriesoriginalparameter_estimationpopulation_dynamicsreaction-diffusion
(0)
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1The Role of the ``Accidental''
J. Grinnell. The Auk, 39 (3): 373-380 (July 1922)
5 months ago by @peter.ralph
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dispersal
long_distance_dispersal
dispersallong_distance_dispersal
(0)
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1Modelling spread of British wind-dispersed plants under future wind speeds in a changing climate
J. Bullock, S. White, C. Prudhomme, C. Tansey, R. Perea, and D. Hooftman. Journal of Ecology, 100 (1): 104-115 (2012)
5 months ago by @peter.ralph
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dispersal_estimation
dispersal_kernel
seed_dispersal
wind_pollination
dispersal_estimationdispersal_kernelseed_dispersalwind_pollination
(0)
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1Mechanistic Analytical Models for Long‐Distance Seed Dispersal by Wind.
G. Katul, A. Porporato, R. Nathan, M. Siqueira, M. Soons, D. Poggi, H. Horn, and S. Levin. The American Naturalist, 166 (3): 368-381 (2005)PMID: 16224691.
5 months ago by @peter.ralph
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dispersal_estimation
dispersal_kernel
seed_dispersal
wind_pollination
dispersal_estimationdispersal_kernelseed_dispersalwind_pollination
(0)
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1Metapopulation Dynamics: From Concepts and Observations to Predictive Models
I. Hanski. Metapopulation Biology, Academic Press, San Diego, (1997)
5 months ago by @peter.ralph
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density-dependent_regulation
density_dependence
review
spatial_structure
density-dependent_regulationdensity_dependencereviewspatial_structure
(0)
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3Environmental Variability Promotes Coexistence in Lottery Competitive Systems
P. Chesson, and R. Warner. The American Naturalist, 117 (6): 923-943 (1981)
5 months ago by @peter.ralph
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coexistence
life_history
original
overlapping_generations
stochastic_environment
storage_effect
coexistencelife_historyoriginaloverlapping_generationsstochastic_environmentstorage_effect
(0)
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1Data-driven Modelling of Structured Populations: A Practical Guide to the Integral Projection Model
S. Ellner, D. Childs, and M. Rees. Springer International Publishing, (2016)
5 months ago by @peter.ralph
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integral_projection_model
integro-difference
methods
review
integral_projection_modelintegro-differencemethodsreview
(0)
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1Quantitative Analysis of Movement: Measuring and Modeling Population Redistribution in Animals and Plants
P. Turchin. Weimar and Now; 13 Sinauer, (1998)
5 months ago by @peter.ralph
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dispersal
dispersal_estimation
mark-recapture
review
spatial_ecology
dispersaldispersal_estimationmark-recapturereviewspatial_ecology
(0)
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1Acorn dispersal estimated by radio-tracking
J. Pons, and J. Pausas. Oecologia, 153 (4): 903--911 (Oct 1, 2007)
5 months ago by @peter.ralph
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acorns
dispersal_kernel
jays
seed_dispersal
acornsdispersal_kerneljaysseed_dispersal
(0)
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1Long-distance seed dispersal affects the resilience of banded vegetation patterns in semi-deserts
J. Bennett, and J. Sherratt. Journal of Theoretical Biology, (2019)Celebrating the 60th Birthday of Professor Philip Maini.
5 months ago by @peter.ralph
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reaction-diffusion
spatial_patterns
vegetation_patterns
reaction-diffusionspatial_patternsvegetation_patterns
(0)
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1Population persistence in the face of advection
F. Lutscher, R. Nisbet, and E. Pachepsky. Theoretical Ecology, 3 (4): 271--284 (Nov 1, 2010)
5 months ago by @peter.ralph
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advection-diffusion
biased_dispersal
drift_paradox
travelling_wave
upstream_divergence
advection-diffusionbiased_dispersaldrift_paradoxtravelling_waveupstream_divergence
(0)
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1Mechanistic models of seed dispersal by animals
J. Morales, and T. Morán López. Oikos, (2022)
5 months ago by @peter.ralph
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dispersal
long_distance_dispersal
review
seed_dispersal
dispersallong_distance_dispersalreviewseed_dispersal
(0)
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1The total dispersal kernel: a review and future directions
H. Rogers, N. Beckman, F. Hartig, J. Johnson, G. Pufal, K. Shea, D. Zurell, J. Bullock, R. Cantrell, B. Loiselle and 6 other author(s). AoB PLANTS, 11 (5): plz042 (September 2019)
5 months ago by @peter.ralph
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dispersal
dispersal_estimation
review
dispersaldispersal_estimationreview
(0)
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1How Gaussian competition leads to lumpy or uniform species distributions
S. Pigolotti, C. López, E. Hernández-García, and K. Andersen. Theoretical Ecology, 3 (2): 89--96 (May 1, 2010)
5 months ago by @peter.ralph
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clumping_populations
competition_kernel
species_coexistence
clumping_populationscompetition_kernelspecies_coexistence
(0)
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1Disturbance, coexistence, history, and competition for space
A. Hastings. Theoretical Population Biology, 18 (3): 363-373 (1980)
5 months ago by @peter.ralph
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coexistence
competition-colonization
life_history_tradeoff
spatial_ecology
coexistencecompetition-colonizationlife_history_tradeoffspatial_ecology
(0)
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1Running from Trouble: Long‐Distance Dispersal and the Competitive Coexistence of Inferior Species
E. Holmes, and H. Wilson. The American Naturalist, 151 (6): 578-586 (1998)
5 months ago by @peter.ralph
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competition-colonization
dispersal
life_history_strategies
life_history_tradeoff
tradeoffs
competition-colonizationdispersallife_history_strategieslife_history_tradeofftradeoffs
(0)
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1Neighborhood models of plant population dynamics. 2. Multi-species models of annuals
S. Pacala. Theoretical Population Biology, 29 (2): 262-292 (1986)
5 months ago by @peter.ralph
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competition-colonization
dispersal
life_history_tradeoff
competition-colonizationdispersallife_history_tradeoff
(0)
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1Interference in Dune Annuals: Spatial Pattern and Neighbourhood Effects
R. Mack, and J. Harper. Journal of Ecology, 65 (2): 345--363 (1977)
5 months ago by @peter.ralph
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competition_kernel
spatial_ecology
competition_kernelspatial_ecology
(0)
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1A Neighborhood Model of Annual-Plant Interference
J. Weiner. Ecology, 63 (5): 1237-1241 (1982)
5 months ago by @peter.ralph
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competition_kernel
knotweeds
spatial_ecology
competition_kernelknotweedsspatial_ecology
(0)
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1Neighborhood Predictors of Plant Performance
J. Silander, Jr, and S. Pacala. Oecologia, 66 (2): 256--263 (1985)
5 months ago by @peter.ralph
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arabidopsis
competition_kernel
spatial_ecology
arabidopsiscompetition_kernelspatial_ecology
(0)
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1Indices of Plant Competition
A. Weigelt, and P. Jolliffe. Journal of Ecology, 91 (5): 707--720 (2003)
5 months ago by @peter.ralph
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competition_kernel
review
spatial_ecology
competition_kernelreviewspatial_ecology
(0)
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1Dispersal Ecology and Evolution
J. Clobert, M. Baguette, T. Benton, and J. Bullock. Oxford University Press, (September 2012)
5 months ago by @peter.ralph
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book
density_dependence
dispersal
dispersal_kernel
dispersal_syndrome
evolution_of_dispersal
bookdensity_dependencedispersaldispersal_kerneldispersal_syndromeevolution_of_dispersal
(0)
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1Estimation of the seed dispersal kernel from exact identification of source plants
J. Robledo-Arnuncio, and C. García. Molecular Ecology, 16 (23): 5098-5109 (2007)
5 months ago by @peter.ralph
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dispersal_estimation
dispersal_kernel
seed_dispersal
dispersal_estimationdispersal_kernelseed_dispersal
(0)
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1Patterns of pollen dispersal in a small population of Pinus sylvestris L. revealed by total-exclusion paternity analysis
J. Robledo-Arnuncio, and L. Gil. Heredity, 94 (1): 13--22 (2005)
5 months ago by @peter.ralph
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dispersal_estimation
dispersal_kernel
pollen_dispersal
dispersal_estimationdispersal_kernelpollen_dispersal
(0)
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1A neighborhood analysis of canopy tree competition: effects of shading versus crowding
C. Canham, P. LePage, and K. Coates. Canadian Journal of Forest Research, 34 (4): 778-787 (2004)
5 months ago by @peter.ralph
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competition_kernel
density_dependence
spatial_ecology
competition_kerneldensity_dependencespatial_ecology
(0)
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1Spatially Explicit Modeling in Ecology: A Review
D. DeAngelis, and S. Yurek. Ecosystems, 20 (2): 284--300 (Mar 1, 2017)
5 months ago by @peter.ralph
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individual_based_model
review
simulation
spatial_ecology
individual_based_modelreviewsimulationspatial_ecology
(0)
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1Simple Competition Indices and Their Correlation with Annual Loblolly Pine Tree Growth
R. Daniels. Forest Science, 22 (4): 454-456 (December 1976)
5 months ago by @peter.ralph
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competition_kernel
forestry
loblolly_pine
spatial_ecology
competition_kernelforestryloblolly_pinespatial_ecology
(0)
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1A New Competition Model for Individual Trees
I. Bella. Forest Science, 17 (3): 364-372 (September 1971)
5 months ago by @peter.ralph
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competition_kernel
forestry
spatial_ecology
competition_kernelforestryspatial_ecology
(0)
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1Intraspecific variation mediates density dependence in a genetically diverse plant species
A. Zaiats, M. Germino, M. Serpe, B. Richardson, and T. Caughlin. Ecology, 102 (11): e03502 (2021)
5 months ago by @peter.ralph
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artemisia
competition_kernel
ploidy
spatial_competition
artemisiacompetition_kernelploidyspatial_competition
(0)
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1Patterns of frequency and density dependence are highly variable in diverse annual flowering plant communities
A. James, M. Mayfield, and J. Dwyer. Ecology, 104 (5): e4021 (2023)
5 months ago by @peter.ralph
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competition
density_dependence
spatial_ecology
competitiondensity_dependencespatial_ecology
(0)
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1When do Janzen-Connell effects matter? A phylogenetic meta-analysis of conspecific negative distance and density dependence experiments
X. Song, J. Lim, J. Yang, and M. Luskin. Ecology Letters, 24 (3): 608-620 (2021)
5 months ago by @peter.ralph
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Janzen-Connell
competition
density_dependence
metastudy
review
spatial_ecology
Janzen-Connellcompetitiondensity_dependencemetastudyreviewspatial_ecology
(0)
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1Enemies Maintain Hyperdiverse Tropical Forests.
J. Terborgh. The American Naturalist, 179 (3): 303-314 (2012)
5 months ago by @peter.ralph
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Janzen-Connell
coexistence
density_dependence
review
spatial_ecology
Janzen-Connellcoexistencedensity_dependencereviewspatial_ecology
(0)
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1On the role of natural enemies in preventing competitive exclusion in some marine animals and in rain forest trees
J. Connell. Dynamics of populations, (1971)
5 months ago by @peter.ralph
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Janzen-Connell
coexistence
density_dependence
original
Janzen-Connellcoexistencedensity_dependenceoriginal
(0)
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1Herbivores and the Number of Tree Species in Tropical Forests
D. Janzen. The American Naturalist, 104 (940): 501-528 (1970)
5 months ago by @peter.ralph
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Janzen-Connell
density_dependence
original
Janzen-Connelldensity_dependenceoriginal
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1Allee effect promotes diversity in traveling waves of colonization
L. Roques, J. Garnier, F. Hamel, and E. Klein. Proceedings of the National Academy of Sciences, 109 (23): 8828-8833 (2012)
5 months ago by @peter.ralph
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allee_effect
range_expansion
travelling_wave
allee_effectrange_expansiontravelling_wave
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1Is Variation in Conspecific Negative Density Dependence Driving Tree Diversity Patterns at Large Scales?
L. Hülsmann, R. Chisholm, and F. Hartig. Trends in Ecology & Evolution, 36 (2): 151--163 (February 2021)
5 months ago by @peter.ralph
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Janzen-Connell
coexistence
density-dependent_regulation
density_dependence
review
spatial_ecology
Janzen-Connellcoexistencedensity-dependent_regulationdensity_dependencereviewspatial_ecology
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1Carrying Capacity of Spatially Distributed Metapopulations
B. Zhang, D. DeAngelis, and W. Ni. Trends in Ecology & Evolution, 36 (2): 164--173 (February 2021)
5 months ago by @peter.ralph
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carrying_capacity
logistic_density_dependence
review
carrying_capacitylogistic_density_dependencereview
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1Banding age ratios reveal prairie waterfowl fecundity is affected by climate, density dependence and predator–prey dynamics
H. Specht, and T. Arnold. Journal of Applied Ecology, 55 (6): 2854-2864 (2018)
5 months ago by @peter.ralph
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age_structure
density_dependence
density_estimation
ducks
fecundity
microtus
wildlife_management
age_structuredensity_dependencedensity_estimationducksfecunditymicrotuswildlife_management
(0)
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1Density dependence and habitat heterogeneity regulate seedling survival in a North American temperate forest
L. Magee, A. Wolf, R. Howe, J. Schubbe, K. Hagenow, and B. Turner. Forest Ecology and Management, (2021)
5 months ago by @peter.ralph
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Janzen-Connell
coexistence
density_dependence
forestry
plant_communities
Janzen-Connellcoexistencedensity_dependenceforestryplant_communities
(0)
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1Density-dependent space use affects interpretation of camera trap detection rates
K. Broadley, A. Burton, T. Avgar, and S. Boutin. Ecology and Evolution, 9 (24): 14031-14041 (2019)
5 months ago by @peter.ralph
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animal_movement
camera_traps
density_estimation
animal_movementcamera_trapsdensity_estimation
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1Separating sources of density-dependent and density-independent establishment limitation in invading species
E. Spotswood, P. Mariotte, E. Farrer, L. Nichols, and K. Suding. Journal of Ecology, 105 (2): 436-444 (2017)
5 months ago by @peter.ralph
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density_dependence
germination
population_regulation
seedling_establishment
density_dependencegerminationpopulation_regulationseedling_establishment
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1Density-Dependent Selection
J. Travis, R. Bassar, T. Coulson, D. Reznick, and M. Walsh. Annual Review of Ecology, Evolution, and Systematics, 54 (1): 85-105 (2023)
5 months ago by @peter.ralph
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density_dependence
density_dependent_selection
r-versus-K-selection
review
density_dependencedensity_dependent_selectionr-versus-K-selectionreview
(0)
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1Making Sense of Spatial Models in Ecology
P. Chesson. Modelling Spatiotemporal Dynamics in Ecology, Academic Press, (1998)
5 months ago by @peter.ralph
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Jensens_inequality
population_dynamics
spatial_ecology
Jensens_inequalitypopulation_dynamicsspatial_ecology
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1Estimation of Dispersal Distances of Culex erraticus in a Focus of Eastern Equine Encephalitis Virus in the Southeastern United States
L. Estep, N. Burkett-Cadena, G. Hill, R. Unnasch, and T. Unnasch. Journal of Medical Entomology, 47 (6): 977-986 (December 2014)
5 months ago by @peter.ralph
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Culex
dispersal_estimation
dispersal_kernel
mosquitos
Culexdispersal_estimationdispersal_kernelmosquitos
(0)
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1On competition
C. De Wit. 66.8. INSTITUOT VOOR BIOLOGISCH EN SCHEIKUNDIG ONDERZOEK VAN LANDBOUWGEWASSEN - WAGENINGEN, (1960)
5 months ago by @peter.ralph
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competition
competition_kernel
competitioncompetition_kernel
(0)
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1Looking forwards and backwards: dynamics and genealogies of locally regulated populations
A. Etheridge, T. Kurtz, I. Letter, P. Ralph, and T. Lung. Electronic Journal of Probability, (2023)
5 months ago by @peter.ralph
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central_limit_theorem
density_dependence
myown
reaction-diffusion
central_limit_theoremdensity_dependencemyownreaction-diffusion
(0)
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1Neighborhood Models of Plant Population Dynamics. I. Single-Species Models of Annuals
S. Pacala, and J. Silander. The American Naturalist, 125 (3): 385--411 (1985)
5 months ago by @peter.ralph
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Bolker-Pacala
competition_kernel
density_dependence
Bolker-Pacalacompetition_kerneldensity_dependence
(0)
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3Coexistence of perennial plants: an embarrassment of niches
P. Adler, S. Ellner, and J. Levine. Ecology Letters, 13 (8): 1019-1029 (2010)
4 months ago by @peter.ralph
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coexistence
competition_kernel
density_dependence
integral_projection_model
spatial_models
coexistencecompetition_kerneldensity_dependenceintegral_projection_modelspatial_models
(0)
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1CREOSOTE BUSH: LONG-LIVED CLONES IN THE Movaje DESERT
F. Vasek. American Journal of Botany, 67 (2): 246-255 (1980)
4 months ago by @peter.ralph
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artemisia
clonal_propagation
creosote
long-lived_individuals
artemisiaclonal_propagationcreosotelong-lived_individuals
(0)
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1Spatial scale and population dynamics in advective media
R. Nisbet, K. Anderson, E. McCauley, and U. Feudel. Spatial Ecology, Chapman and Hall/CRC, (2009)
4 months ago by @peter.ralph
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advection-diffusion
drift_paradox
spatial_demography
spatial_ecology
advection-diffusiondrift_paradoxspatial_demographyspatial_ecology
(0)
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1What does ecological modelling model? A proposed classification of ecological niche models based on their underlying methods
N. Sillero. Ecological Modelling, 222 (8): 1343-1346 (2011)
4 months ago by @peter.ralph
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niche_modeling
review
niche_modelingreview
(0)
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1Predicting Species' Geographic Distributions Based on Ecological Niche Modeling
A. Peterson. The Condor, 103 (3): 599-605 (August 2001)
4 months ago by @peter.ralph
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niche_modeling
niche_modeling
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2Common mistakes in ecological niche models
N. Sillero, and A. Barbosa. International Journal of Geographical Information Science, 35 (2): 213-226 (2021)
4 months ago by @peter.ralph
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niche_modeling
review
statistics
niche_modelingreviewstatistics
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1A practical overview of transferability in species distribution modeling
W. Werkowska, A. Márquez, R. Real, and P. Acevedo. Environmental Reviews, 25 (1): 127-133 (2017)
4 months ago by @peter.ralph
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hindcasting
niche_modeling
review
hindcastingniche_modelingreview
(0)
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1Niche analysis and tree species introduction
T. Booth, H. Nix, M. Hutchinson, and T. Jovanic. Forest Ecology and Management, 23 (1): 47-59 (1988)
4 months ago by @peter.ralph
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Eucalyptus
climate_variables
niche_modeling
original
Eucalyptusclimate_variablesniche_modelingoriginal
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1Outstanding Challenges in the Transferability of Ecological Models
K. Yates, P. Bouchet, M. Caley, K. Mengersen, C. Randin, S. Parnell, A. Fielding, A. Bamford, S. Ban, A. Barbosa and 40 other author(s). Trends in Ecology & Evolution, 33 (10): 790--802 (October 2018)
4 months ago by @peter.ralph
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hindcasting
niche_modeling
review
hindcastingniche_modelingreview
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1Landscape Genetics of Plants: Challenges and Opportunities
M. Cruzan, and E. Hendrickson. Plant Communications, 1 (6): 100100 (2020)
4 months ago by @peter.ralph
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landscape_genetics
review
landscape_geneticsreview
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2Methodological Issues of Spatial Agent-Based Models
S. Manson, L. An, K. Clarke, A. Heppenstall, J. Koch, B. Krzyzanowski, F. Morgan, D. O’Sullivan, B. Runck, E. Shook and 1 other author(s). Journal of Artificial Societies and Social Simulation, (2020)
4 months ago by @peter.ralph
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agent-based_simulation
review
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1“It's ok -- Not everyone can be good at math”: Instructors with an entity theory comfort (and demotivate) students
A. Rattan, C. Good, and C. Dweck. Journal of Experimental Social Psychology, 48 (3): 731-737 (2012)
4 months ago by @peter.ralph
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1Making Predictions in a Changing World: The Benefits of Individual-Based Ecology
R. Stillman, S. Railsback, J. Giske, U. Berger, and V. Grimm. Bioscience, 65 (2): 140--150 (February 2015)
4 months ago by @peter.ralph
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1Spatially Explicit Population Models: Current Forms and Future Uses
J. Dunning Jr, D. Stewart, B. Danielson, B. Noon, T. Root, R. Lamberson, and E. Stevens. Ecological Applications, 5 (1): 3-11 (1995)
4 months ago by @peter.ralph
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1Estimating the functional form for the density dependence from life history data
T. Coulson, T. Ezard, F. Pelletier, G. Tavecchia, N. Stenseth, D. Childs, J. Pilkington, J. Pemberton, L. Kruuk, T. Clutton-Brock and 1 other author(s). Ecology, 89 (6): 1661-1674 (2008)
4 months ago by @peter.ralph
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1Estimating density dependence from population time series using demographic theory and life-history data
R. Lande, S. Engen, B. Saether, F. Filli, E. Matthysen, and H. Weimerskirch. The American Naturalist, 159 (4): 321--337 (April 2002)
4 months ago by @peter.ralph
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1Density dependence and stochastic variation in a newly established population of a small songbird
B. Sæther, S. Engen, R. Lande, C. Both, and M. Visser. Oikos, 99 (2): 331-337 (2002)
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1On the Mechanistic Derivation of Various Discrete-Time Population Models
H. Eskola, and S. Geritz. Bulletin of Mathematical Biology, 69 (1): 329--346 (Jan 1, 2007)
4 months ago by @peter.ralph
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2Random Dispersal in Theoretical Populations
J. Skellam. Biometrika, 38 (1/2): 196--218 (1951)
4 months ago by @peter.ralph
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Fisher-KPP
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1Persistence for stochastic difference equations: a mini-review
S. Schreiber. Journal of Difference Equations and Applications, 18 (8): 1381-1403 (2012)
4 months ago by @peter.ralph
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1Census error and the detection of density dependence
R. Freckleton, A. Watkinson, R. Green, and W. Sutherland. Journal of Animal Ecology, 75 (4): 837-851 (2006)
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1Persistence and extinction for stochastic ecological models with internal and external variables
M. Benaïm, and S. Schreiber. Journal of Mathematical Biology, 79 (1): 393--431 (Jul 1, 2019)
4 months ago by @peter.ralph
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1Predicting Population Dynamics from the Properties of Individuals: A Cross-Level Test of Dynamic Energy Budget Theory.
B. Martin, T. Jager, R. Nisbet, T. Preuss, and V. Grimm. The American Naturalist, 181 (4): 506-519 (2013)
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1Matrix population models
H. Caswell. Sinauer Sunderland, MA, (2000)
4 months ago by @peter.ralph
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1Resource-explicit interactions in spatial population models
S. Champer, B. Chae, B. Haller, J. Champer, and P. Messer. bioRxiv, (2024)
4 months ago by @peter.ralph
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1Stochastic Population Dynamics in Ecology and Conservation
R. Lande, S. Engen, and B. Saether. Oxford University Press, (April 2003)
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1The era of the ARG: An introduction to ancestral recombination graphs and their significance in empirical evolutionary genomics
A. Lewanski, M. Grundler, and G. Bradburd. PLOS Genetics, 20 (1): 1-24 (January 2024)
4 months ago by @peter.ralph
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1Spatially explicit integrated population models
R. Chandler, and J. Clark. Methods in Ecology and Evolution, 5 (12): 1351-1360 (2014)
4 months ago by @peter.ralph
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1Integrated population models: powerful methods to embed individual processes in population dynamics models
F. Plard, R. Fay, M. Kéry, A. Cohas, and M. Schaub. Ecology, 100 (6): e02715 (2019)
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1IPM$^2$: toward better understanding and forecasting of population dynamics
F. Plard, D. Turek, M. Grüebler, and M. Schaub. Ecological Monographs, 89 (3): e01364 (2019)
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1Estimating and forecasting spatial population dynamics of apex predators using transnational genetic monitoring
R. Bischof, C. Milleret, P. Dupont, J. Chipperfield, M. Tourani, A. Ordiz, P. de Valpine, D. Turek, J. Royle, O. Gimenez and 5 other author(s). Proceedings of the National Academy of Sciences, 117 (48): 30531-30538 (2020)
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1An integrated path for spatial capture-recapture and animal movement modeling
B. McClintock, B. Abrahms, R. Chandler, P. Conn, S. Converse, R. Emmet, B. Gardner, N. Hostetter, and D. Johnson. Ecology, 103 (10): e3473 (2022)
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1Synthesizing multiple data types for biological conservation using integrated population models
E. Zipkin, and S. Saunders. Biological Conservation, (2018)
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1An integrated population model for bird monitoring in North America
F. Ahrestani, J. Saracco, J. Sauer, K. Pardieck, and J. Royle. Ecological Applications, 27 (3): 916-924 (2017)
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1Integrated population models: Model assumptions and inference
T. Riecke, P. Williams, T. Behnke, D. Gibson, A. Leach, B. Sedinger, P. Street, and J. Sedinger. Methods in Ecology and Evolution, 10 (7): 1072-1082 (2019)
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1Resource competition and community structure
D. Tilman. Princeton University Press, (1982)
4 months ago by @peter.ralph
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2A scalable estimator of SNP heritability for biobank-scale data
Y. Wu, and S. Sankararaman. Bioinformatics (Oxford, England), 34 (13): i187--i194 (July 2018)
3 months ago by @peter.ralph
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3European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation
M. Tine, H. Kuhl, P. Gagnaire, B. Louro, E. Desmarais, R. Martins, J. Hecht, F. Knaust, K. Belkhir, S. Klages and 11 other author(s). Nature Communications, 5 (1): 5770 (Dec 23, 2014)
3 months ago by @peter.ralph
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1Continuous selective models
T. Nagylaki, and J. Crow. Theoretical Population Biology, 5 (2): 257-283 (1974)
3 months ago by @peter.ralph
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2Differential Fertility in Population Genetics Models
W. Bodmer. Genetics, 51 (3): 411--424 (March 1965)
3 months ago by @peter.ralph
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1The distribution of waiting distances in ancestral recombination graphs
Y. Deng, Y. Song, and R. Nielsen. Theoretical population biology, (October 2021)
2 months ago by @peter.ralph
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1Evaluation of methods for estimating coalescence times using ancestral recombination graphs
D. Brandt, X. Wei, Y. Deng, A. Vaughn, and R. Nielsen. Genetics, 221 (1): iyac044 (2022)
2 months ago by @peter.ralph
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1Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data
C. Battey, P. Ralph, and A. Kern. Genetics, 215 (1): 193-214 (May 2020)
2 months ago by @peter.ralph
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3Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa
S. Ramachandran, O. Deshpande, C. Roseman, N. Rosenberg, M. Feldman, and L. Cavalli-Sforza. Proceedings of the National Academy of Sciences, 102 (44): 15942-15947 (2005)
a month ago by @peter.ralph
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1Dispersal inference from population genetic variation using a convolutional neural network
C. Smith, S. Tittes, P. Ralph, and A. Kern. Genetics, 224 (2): iyad068 (April 2023)
a month ago by @peter.ralph
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1Estimation of spatial demographic maps from polymorphism data using a neural network
C. Smith, G. Patterson, P. Ralph, and A. Kern. bioRxiv, (2024)
a month ago by @peter.ralph
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1Multivariate $t$-Distributions and Their Applications
S. Kotz, and S. Nadarajah. Cambridge University Press, Cambridge, (2004)
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1A Mechanical Model for the Study of Population Dynamics
O. Pearson. Ecology, 41 (3): 494--508 (1960)
a month ago by @peter.ralph
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1The population genetics of dN/dS
S. Kryazhimskiy, and J. Plotkin. PLoS genetics, 4 (12): e1000304--e1000304 (December 2008)
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1Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution
M. Kimura. Nature, 267 (5608): 275--276 (May 1977)
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1Genomic signatures of selection at linked sites: unifying the disparity among species
A. Cutter, and B. Payseur. Nature Reviews Genetics, 14 (4): 262--274 (Apr 1, 2013)
a month ago by @peter.ralph
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1Effects of linkage on rates of molecular evolution
C. Birky, Jr, and J. Walsh. Proceedings of the National Academy of Sciences of the United States of America, 85 (17): 6414--6418 (September 1988)
a month ago by @peter.ralph
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1Estimating scale-specific and localized spatial patterns in allele frequency
J. Lasky, M. Takou, D. Gamba, and T. Keitt. Genetics, (May 2024)
39 minutes ago by @peter.ralph
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