visone is a software for the visual creation, transformation, exploration, analysis and representation of network data, jointly developed at the University of Konstanz and the Karlsruhe Institute of Technology since 2001.
MatlabBGL is a Matlab package for working with graphs. It uses the Boost Graph Library to efficiently implement the graph algorithms. MatlabBGL is designed to work with large sparse graphs with hundreds of thousands of nodes.
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H. Tangmunarunkit, R. Govindan, S. Jamin, S. Shenker, and W. Willinger. SIGCOMM '02: Proceedings of the 2002 conference on Applications, technologies, architectures, and protocols for computer communications, page 147--159. New York, NY, USA, ACM, (2002)