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Cyclone: open-source package for simulation and analysis of finite dynamical systems.

, , , and . Bioinform., (November 2023)

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Probabilistic polynomial dynamical systems for reverse engineering of gene regulatory networks., , and . EURASIP J. Bioinformatics and Systems Biology, (2011)A Unified Approach to Reverse Engineering and Data Selection for Unique Network Identification., , and . SIAM J. Appl. Dyn. Syst., 23 (1): 592-615 (March 2024)Cyclone: open-source package for simulation and analysis of finite dynamical systems., , , and . Bioinform., (November 2023)Parameter estimation for Boolean models of biological networks., , , , , , , and . Theor. Comput. Sci., 412 (26): 2816-2826 (2011)The innate immune response to ischemic injury: a multiscale modeling perspective., , , and . BMC Syst. Biol., 12 (1): 50:1-50:13 (2018)Estimating the Volumes of the Cones in a Gröbner Fan.. Math. Comput. Sci., 3 (4): 457-463 (2010)PlantSimLab - a modeling and simulation web tool for plant biologists., , , , , , , , , and 5 other author(s). BMC Bioinform., 20 (1): 508 (December 2019)A Gröbner fan method for biochemical network modeling., , , and . ISSAC, page 122-126. ACM, (2007)Revealing the canalizing structure of Boolean functions: Algorithms and applications., , , and . Autom., (2022)Algebraic model selection and experimental design in biological data science., , , , and . Adv. Appl. Math., (2022)