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Missing value imputation for epistatic MAPs., , , and . BMC Bioinform., (2010)An Overview of Label-Free Quantitation Methods in Proteomics by Mass Spectrometry., and . Proteome Bioinformatics, Springer, (2010)Optimal stepwise experimental design for pairwise functional interaction studies., , , and . Bioinform., 24 (23): 2733-2739 (2008)SpecAlign - processing and alignment of mass spectra datasets., , and . Bioinform., 21 (9): 2088-2090 (2005)msmsEval: tandem mass spectral quality assignment for high-throughput proteomics., , , and . BMC Bioinform., (2007)Functional Organization of the S. cerevisiae Phosphorylation Network, , , , , , , , , and . Cell, 136 (5): 952--963 (March 2009)Experimental Methods for Protein Interaction Identification and Characterization., , and . Protein-protein Interactions and Networks, volume 9 of Computational Biology, Springer, (2008)Global landscape of HIV-human protein complexes., , , , , , , , , and 27 other author(s). Nat., 481 (7381): 365-370 (2012)Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments., , and . Briefings Bioinform., 9 (2): 156-165 (2008)Ensemble non-negative matrix factorization methods for clustering protein-protein interactions., , , and . Bioinform., 24 (15): 1722-1728 (2008)