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Finding optimal degenerate patterns in DNA sequences., , and . ECCB, page 206-214. (2003)Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions., , , and . SODA, page 695-702. ACM/SIAM, (1998)A dynamic programming algorithm to predict synthesis processes of tree-structured compounds with graph grammar., , , and . Genome informatics. International Conference on Genome Informatics, (2010)A Linear Time Pattern Matching Algorithm Between a String and a Tree.. CPM, volume 684 of Lecture Notes in Computer Science, page 1-10. Springer, (1993)Dynamic Programming Algorithms for RNA Structure Prediction with Binding Sites., , and . Pacific Symposium on Biocomputing, page 98-107. World Scientific Publishing, (2010)Tree Edit Distance with Variables. Measuring the Similarity between Mathematical Formulas., , , , , and . CoRR, (2021)An Efficient Method of Computing Impact Degrees for Multiple Reactions in Metabolic Networks with Cycles., , , and . IEICE Trans. Inf. Syst., 94-D (12): 2393-2399 (2011)A grammatical approach to RNA-RNA interaction prediction., , and . Pattern Recognit., 42 (4): 531-538 (2009)A clique-based method for the edit distance between unordered trees and its application to analysis of glycan structures., , , , and . BMC Bioinform., 12 (S-1): S13 (2011)Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology., and . BMC Bioinform., (2009)