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Metabolic reconstruction for metagenomic data and its application to the human microbiome., , , , , , , , , and 7 other author(s). PLoS computational biology, 8 (6): e1002358+ (Jun 13, 2012)Learning from Positive and Unlabeled Documents for Retrieval of Bacterial Protein-Protein Interaction Literature., , , , and . BioLINK@ISMB/ECCB, volume 6004 of Lecture Notes in Computer Science, page 62-70. Springer, (2008)METAREP: JCVI metagenomics reports - an open source tool for high-performance comparative metagenomics., , , , , , and . Bioinform., 26 (20): 2631-2632 (2010)MPIDB: the microbial protein interaction database., , , , , and . Bioinform., 24 (15): 1743-1744 (2008)Classification Systems for Bacterial Protein-Protein Interaction Document Retrieval., , , and . Int. J. Comput. Model. Algorithms Medicine, 1 (1): 34-44 (2010)A new reference implementation of the PSICQUIC web service., , , , , , , , , and 1 other author(s). Nucleic Acids Res., 41 (Webserver-Issue): 601-606 (2013)The Diatom EST Database., , , , , , and . Nucleic Acids Res., 33 (Database-Issue): 344-347 (2005)MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions., , , , , , , , , and 4 other author(s). Bioinform., 24 (22): 2622-2627 (2008)RSEQREP: RNA-Seq Reports, an open-source cloud-enabled framework for reproducible RNA-Seq data processing, analysis, and result reporting., , , , , , and . F1000Research, (2017)RP-REP Ribosomal Profiling Reports: an open-source cloud-enabled framework for reproducible ribosomal profiling data processing, analysis, and result reporting., , , and . F1000Research, (2021)