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A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity., , , and . Bioinform., 22 (19): 2333-2339 (2006)3dLOGO: a web server for the identification, analysis and use of conserved protein substructures., , , , , , and . Nucleic Acids Res., 35 (Web-Server-Issue): 416-419 (2007)Kinome-wide identification of phosphorylation networks in eukaryotic proteomes., , , , , , , and . Bioinform., 35 (3): 372-379 (2019)SH3-Hunter: discovery of SH3 domain interaction sites in proteins., , , , and . Nucleic Acids Res., 35 (Web-Server-Issue): 451-454 (2007)DBATE: database of alternative transcripts expression., , , , , and . Database J. Biol. Databases Curation, (2013)ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins., , , , , , , , , and 18 other author(s). Nucleic Acids Res., 31 (13): 3625-3630 (2003)Nucleos: a web server for the identification of nucleotide-binding sites in protein structures., , , and . Nucleic Acids Res., 41 (Webserver-Issue): 281-285 (2013)Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities., , , and . BMC Bioinform., 13 (S-4): S17 (2012)Query3d: a new method for high-throughput analysis of functional residues in protein structures., , and . BMC Bioinform., (2005)Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites., , , and . BMC Bioinform., (2007)