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Reconstructing the virulome of the human pathogen Streptococcus pyogenes using NMPDR subsystems-based annotation., and . BMC Bioinform., (2009)SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models, , , , , , , , , and 3 other author(s). PLoS ONE, 7 (10): e48053+ (Oct 24, 2012)Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity., , , , , and . Proceedings of the National Academy of Sciences of the United States of America, (Jun 28, 2016)Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments, , , , , , , and . Proceedings of the National Academy of Sciences, 110 (50): 20338--20343 (Dec 10, 2013)The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation., , , , , , , , , and 19 other author(s). Nucleic Acids Res., 35 (Database-Issue): 347-353 (2007)Integrating neighbor clustering, coexpression clustering and subsystems analysis to define dynamic changes in regulatory networks associated with group A streptococcal sociomicrobiology and niche adaptation., , , , , , and . BMC Bioinform., 11 (S-4): P12 (2010)Do pathogenic bacteria encode more secreted proteins than their non-pathogenic relatives?, and . BMC Bioinform., 11 (S-4): P28 (2010)Phage Eco-Locator: a web tool for visualization and analysis of phage genomes in metagenomic data sets., , , and . BMC Bioinform., 12 (S-7): A9 (2011)Bioinformatics determination of ETEC signature genes as potential targets for molecular diagnosis and reverse vaccinology., , and . BMC Bioinform., (2009)Subsystems-based servers for rapid annotation of genomes and metagenomes.. BMC Bioinform., 11 (S-4): O2 (2010)