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SimMLST: simulation of multi-locus sequence typing data under a neutral model., , и . Bioinform., 25 (11): 1442-1444 (2009)A dynamic power-law sexual network model of gonorrhoea outbreaks., , и . PLoS Comput. Biol., (2019)Inference of Bacterial Microevolution Using Multilocus Sequence Data, и . Genetics, 175 (3): 1251--1266 (2007)Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks., , , , и . PLoS Comput. Biol., (2017)SARS-CoV-2 transmissibility compared between variants of concern and vaccination status., , , и . Briefings Bioinform., (2022)outbreaker2: a modular platform for outbreak reconstruction., , , , , и . BMC Bioinform., 19-S (11): 363:1-363:8 (2018)Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data., , , , , и . PLoS Comput. Biol., (2014)ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes., и . PLoS Comput. Biol., (2015)A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination., и . PLoS Comput. Biol., (2018)Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease., , , и . Bioinform., (января 2023)