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Hidden Markov Models with Patterns and Their Application to Integrated Circuit Testing., , and . ECML, volume 1810 of Lecture Notes in Computer Science, page 75-87. Springer, (2000)Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes., , , , , , and . PLoS Comput. Biol., (2021)Hidden Markov Models with Patterns to Learn Boolean Vector Sequences and Application to the Built-In Self-Test for Integrated Circuits., , and . IEEE Trans. Pattern Anal. Mach. Intell., 23 (9): 997-1008 (2001)A Bayesian Approach for the Clustering of Short Time Series.. Rev. d'Intelligence Artif., 20 (6): 697-716 (2006)PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data., , and . BMC Bioinform., (2008)Hidden Markov and Independence Models with Patterns for Sequential BIST., , , , and . VTS, page 359-368. IEEE Computer Society, (2000)Clustering Gene Expression Series with Prior Knowledge.. WABI, volume 3692 of Lecture Notes in Computer Science, page 27-38. Springer, (2005)Improving pairwise comparison of protein sequences with domain co-occurrence., , and . PLoS Comput. Biol., (2018)Probing instructions for expression regulation in gene nucleotide compositions., , , , , , , and . PLoS Comput. Biol., (2018)Accounting for ambiguity in ancestral sequence reconstruction., , , , , and . Bioinform., 35 (21): 4290-4297 (2019)