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Fast Fourier transform for fitness landscapes, , , and . Appl. Comput. Harmon. Anal., 12 (1): 57--76 (2002)Density of States, Metastable States, and Saddle Points: Exploring the Energy Landscape of an RNA Molecule., , , and . ISMB, page 88-91. AAAI, (1997)Knowledge Discovery in RNA Sequence Families of HIV Using Scalable Computers., , , and . KDD, page 20-25. AAAI Press, (1996)Fast accessibility-based prediction of RNA-RNA interactions., , , , and . Bioinform., 27 (14): 1934-1940 (2011)Thermodynamics of RNA-RNA binding., , , , , and . Bioinform., 22 (10): 1177-1182 (2006)Prediction of locally stable RNA secondary structures for genome-wide surveys., , and . Bioinform., 20 (2): 186-190 (2004)maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences., , and . Bioinform., 27 (3): 317-325 (2011)Conserved RNA secondary structures in viral genomes: a survey., , and . Bioinform., 20 (10): 1495-1499 (2004)Bio-molecular Shapes and Algebraic Structures., and . Comput. Chem., 20 (1): 85-94 (1996)tRNAdb 2009: compilation of tRNA sequences and tRNA genes., , , , , and . Nucleic Acids Res., 37 (Database-Issue): 159-162 (2009)