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Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic., , and . PLoS Comput. Biol., (2020)GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotations., , , and . Bioinform., (February 2023)EDEN: evolutionary dynamics within environments., , and . Bioinform., 33 (20): 3292-3295 (2017)Evaluating assembly and variant calling software for strain-resolved analysis of large DNA viruses., , , , , , , , and . Briefings Bioinform., (2021)MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples., , , and . Bioinform., 35 (6): 1082 (2019)DiTaxa: nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detection., , , , and . Bioinform., 35 (14): 2498-2500 (2019)Scelestial: Fast and accurate single-cell lineage tree inference based on a Steiner tree approximation algorithm., , and . PLoS Comput. Biol., (2022)TripletProt: Deep Representation Learning of Proteins Based On Siamese Networks., , , and . IEEE ACM Trans. Comput. Biol. Bioinform., 19 (6): 3744-3753 (2022)Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research., , , , , , , , , and 45 other author(s). Briefings Bioinform., 22 (2): 642-663 (2021)Neural Architecture Search for Genomic Sequence Data., , , , , , , and . CIBCB, page 1-10. IEEE, (2023)