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A new framework for computational protein design through cost function network optimization.

, , , , , , and . Bioinform., 29 (17): 2129-2136 (2013)

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Russian Doll Search with Tree Decomposition., , , and . IJCAI, page 603-608. (2009)Towards Parallel Non Serial Dynamic Programming for Solving Hard Weighted CSP., , and . CP, volume 6308 of Lecture Notes in Computer Science, page 53-60. Springer, (2010)Russian Doll Search with Tree Decomposition., , , and . IJCAI, page 603-608. (2009)Variable neighborhood search for graphical model energy minimization., , , , , , and . Artif. Intell., (2020)Computational Protein Design as a Cost Function Network Optimization Problem., , , , , , and . CP, volume 7514 of Lecture Notes in Computer Science, page 840-849. Springer, (2012)Tractability and Decompositions of Global Cost Functions., , , , , , , , , and 1 other author(s). CoRR, (2015)Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems., , , , , , and . J. Chem. Inf. Model., 59 (1): 127-136 (2019)Virtual Pairwise Consistency in Cost Function Networks., , , , and . CPAIOR, volume 13884 of Lecture Notes in Computer Science, page 417-426. Springer, (2023)Filtering Decomposable Global Cost Functions., , , , , , , and . AAAI, page 407-413. AAAI Press, (2012)Computation Protein Design instances with small tree-width: selection based on coarse approximated 3D average position volume.. CoRR, (2019)