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Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data.

, , , , , and . Quant. Biol., 8 (3): 267-276 (2020)

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A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences., , and . ISMB (Supplement of Bioinformatics), page 274-282. (2005)Convex Underestimation of Twice Continuously Differentiable Functions by Piecewise Quadratic Perturbation: Spline αBB Underestimators., and . J. Glob. Optim., 32 (2): 221-258 (2005)Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis., , , , , , , , , and 1 other author(s). Nucleic Acids Res., 47 (Database-Issue): D729-D735 (2019)Improved design and analysis of CRISPR knockout screens., , , , , , , and . Bioinform., 34 (23): 4095-4101 (2018)Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse., , , , , , , , , and 4 other author(s). Nucleic Acids Res., 45 (Database-Issue): D658-D662 (2017)ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline., , , , , , , , , and 6 other author(s). BMC Bioinform., (2016)Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data., , , , , , , and . Bioinform., (February 2023)Global optimization in the 21st century: Advances and challenges., , , , and . Comput. Chem. Eng., 29 (6): 1185-1202 (2005)Convex envelopes for edge-concave functions., and . Math. Program., 103 (2): 207-224 (2005)BINOCh: binding inference from nucleosome occupancy changes., , , and . Bioinform., 27 (13): 1867-1868 (2011)