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Comparison of methods for phylogenetic B-cell lineage inference using time-resolved antibody repertoire simulations (AbSim)., , , , , , , , and . Bioinform., 33 (24): 3938-3946 (2017)GenSpectrum Chat: Data Exploration in Public Health Using Large Language Models., and . CoRR, (2023)MASCOT: parameter and state inference under the marginal structured coalescent approximation., , and . Bioinform., 34 (22): 3843-3848 (2018)Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models., , and . PLoS Comput. Biol., (2014)Phylodynamics on local sexual contact networks., , , and . PLoS Comput. Biol., (2017)A Characterization of the Set of Species Trees that Produce Anomalous Ranked Gene Trees., , and . IEEE ACM Trans. Comput. Biol. Bioinform., 9 (6): 1558-1568 (2012)Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany., , , , , , , , , and 5 other author(s). PLoS Comput. Biol., (November 2023)CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants., , , , , , and . Bioinform., 38 (6): 1735-1737 (2022)Practical considerations for measuring the effective reproductive number, Rt., , , , , , , , , and 15 other author(s). PLoS Comput. Biol., (2020)Inferring Epidemic Contact Structure from Phylogenetic Trees., , , , , , , , , and . PLoS Comput. Biol., (2012)