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Exploring a Structural Data Mining Approach to Design Linkers for Head-to-Tail Peptide Cyclization.

, , , , , , , , and . J. Chem. Inf. Model., 63 (20): 6436-6450 (October 2023)

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PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution., , , , and . Nucleic Acids Res., 51 (W1): 432-437 (July 2023)Exploring a Structural Data Mining Approach to Design Linkers for Head-to-Tail Peptide Cyclization., , , , , , , , and . J. Chem. Inf. Model., 63 (20): 6436-6450 (October 2023)Fast and accurate grid representations for atom-based docking with partner flexibility., and . J. Comput. Chem., 38 (17): 1538-1546 (2017)Dynamic Control of Selectivity in the Ubiquitination Pathway Revealed by an ASP to GLU Substitution in an Intra-Molecular Salt-Bridge Network., , , , and . PLoS Comput. Biol., (2012)Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach., , and . PLoS Comput. Biol., (2016)ProtNAff: protein-bound Nucleic Acid filters and fragment libraries., , , and . Bioinform., 38 (16): 3911-3917 (2022)Intramolecular surface contacts contain information about protein-protein interface regions., and . Bioinform., 22 (17): 2094-2098 (2006)The pepATTRACT web server for blind, large-scale peptide-protein docking., , , , and . Nucleic Acids Res., 45 (Webserver-Issue): W361-W364 (2017)DaReUS-Loop: a web server to model multiple loops in homology models., , , , , and . Nucleic Acids Res., 47 (Webserver-Issue): W423-W428 (2019)HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses., , , and . BMC Bioinform., 25 (1): 129 (December 2024)