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ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational Signatures.

, , , and . J. Comput. Biol., 29 (1): 56-73 (2022)

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CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer., , , and . RECOMB, volume 9029 of Lecture Notes in Computer Science, page 202-204. Springer, (2015)Evaluating Between-Pathway Models with Expression Data., , , and . J. Comput. Biol., 17 (3): 477-487 (2010)DNA Repair Footprint Uncovers Contribution of DNA Repair Mechanism to MutationalSignatures., , , and . PSB, page 262-273. (2020)Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut., , , and . J. Comput. Biol., 18 (11): 1399-1409 (2011)Simultaneous Identification of Multiple Driver Pathways in Cancer., , , and . PLoS Comput. Biol., (2013)Evaluating Between-Pathway Models with Expression Data., , , and . RECOMB, volume 5541 of Lecture Notes in Computer Science, page 372-385. Springer, (2009)A data-driven approach for constructing mutation categories for mutational signature analysis., , and . PLoS Comput. Biol., (2021)A mutation-level covariate model for mutational signatures., , and . PLoS Comput. Biol., (2023)Methods for Identifying Combinations of Driver Mutations in Cancer.. Brown University, USA, (2016)What are the biases in my word embedding?, , , , and . CoRR, (2018)