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DAnTE: a statistical tool for quantitative analysis of -omics data., , , , , , , and . Bioinform., 24 (13): 1556-1558 (2008)Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition., , , , , , and . Bioinform., 25 (19): 2573-2580 (2009)MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features., , , , and . Comput. Biol. Chem., 32 (3): 215-217 (2008)Omic data from evolved E. coli are consistent with computed optimal growth from genome‐scale models, , , , , , , , , and 5 other author(s). Molecular Systems Biology, 6 (1): 390+ (Jan 1, 2010)Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes., , , , , , , , , and 6 other author(s). Molecular bioSystems, 9 (6): 1522--1534 (Jun 7, 2013)An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92., , , , , , , , and . BMC Syst. Biol., (2011)efam: an expanded, metaproteome-supported HMM profile database of viral protein families., , , , , , , , , and 4 other author(s). Bioinform., 37 (22): 4202-4208 (November 2021)An Architecture for Real Time Data Acquisition and Online Signal Processing for High Throughput Tandem Mass Spectrometry., , , , , , , , , and 1 other author(s). eScience, page 88-93. IEEE Computer Society, (2009)Unified feature association networks through integration of transcriptomic and proteomic data., , , , , , , , and . PLoS Comput. Biol., (2019)PQuad - a visual analysis platform for proteomic data exploration of microbial organisms., , , , , , and . Bioinform., 23 (13): 1705-1707 (2007)