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Inferring causal molecular networks: empirical assessment through a community-based effort, , , , , , , , , and 163 other author(s). Nature Methods, 13 (4): 310--318 (Feb 22, 2016)A field guide to cultivating computational biology., , , , , , , , , and 4 other author(s). CoRR, (2021)Identifying context-specific transcription factor targets from prior knowledge and gene expression data., , and . BIBM, page 1-6. IEEE Computer Society, (2012)Cancer Systems Biology., , and . Handbook of Statistical Bioinformatics, Springer, (2011)Matrix factorization for transcriptional regulatory network inference., and . CIBCB, page 387-396. IEEE, (2012)CoGAPS 3: Bayesian non-negative matrix factorization for single-cell analysis with asynchronous updates and sparse data structures., , and . BMC Bioinform., 21 (1): 453 (2020)Regression Expression Variation Analysis (REVA): a rank-based multi-dimensional measure of correlation., , , and . ICMLA, page 1063-1070. IEEE, (2022)switchBox: an R package for k-Top Scoring Pairs classifier development., , , and . Bioinform., 31 (2): 273-274 (2015)PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF., , , , , , , , , and 6 other author(s). Bioinform., 33 (12): 1892-1894 (2017)AGA: Interactive pipeline for reproducible genomics analyses., , , , , , and . F1000Research, (2015)