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Assessment of network module identification across complex diseases

S. Choobdar, M. Ahsen, J. Crawford, M. Tomasoni, T. Fang, D. Lamparter, J. Lin, B. Hescott, X. Hu, J. Mercer, T. Natoli, R. Narayan, F. Aicheler, N. Amoroso, A. Arenas, K. Azhagesan, A. Baker, M. Banf, S. Batzoglou, A. Baudot, R. Bellotti, S. Bergmann, K. Boroevich, C. Brun, S. Cai, M. Caldera, A. Calderone, G. Cesareni, W. Chen, C. Chichester, S. Choobdar, L. Cowen, J. Crawford, H. Cui, P. Dao, M. De Domenico, A. Dhroso, G. Didier, M. Divine, A. del Sol, T. Fang, X. Feng, J. Flores-Canales, S. Fortunato, A. Gitter, A. Gorska, Y. Guan, A. Guénoche, S. Gómez, H. Hamza, A. Hartmann, S. He, A. Heijs, J. Heinrich, B. Hescott, X. Hu, Y. Hu, X. Huang, V. Hughitt, M. Jeon, L. Jeub, N. Johnson, K. Joo, I. Joung, S. Jung, S. Kalko, P. Kamola, J. Kang, B. Kaveelerdpotjana, M. Kim, Y. Kim, O. Kohlbacher, D. Korkin, K. Krzysztof, K. Kunji, Z. Kutalik, K. Lage, D. Lamparter, S. Lang-Brown, T. Le, J. Lee, S. Lee, J. Lee, D. Li, J. Li, J. Lin, L. Liu, A. Loizou, Z. Luo, A. Lysenko, T. Ma, R. Mall, D. Marbach, T. Mattia, M. Medvedovic, J. Menche, J. Mercer, E. Micarelli, A. Monaco, F. Müller, R. Narayan, O. Narykov, T. Natoli, T. Norman, S. Park, L. Perfetto, D. Perrin, S. Pirrò, T. Przytycka, X. Qian, K. Raman, D. Ramazzotti, E. Ramsahai, B. Ravindran, P. Rennert, J. Saez-Rodriguez, C. Schärfe, R. Sharan, N. Shi, W. Shin, H. Shu, H. Sinha, D. Slonim, L. Spinelli, S. Srinivasan, A. Subramanian, C. Suver, D. Szklarczyk, S. Tangaro, S. Thiagarajan, L. Tichit, T. Tiede, B. Tripathi, A. Tsherniak, T. Tsunoda, D. Türei, E. Ullah, G. Vahedi, A. Valdeolivas, J. Vivek, C. von Mering, A. Waagmeester, B. Wang, Y. Wang, B. Weir, S. White, S. Winkler, K. Xu, T. Xu, C. Yan, L. Yang, K. Yu, X. Yu, G. Zaffaroni, M. Zaslavskiy, T. Zeng, J. Zhang, L. Zhang, W. Zhang, L. Zhang, X. Zhang, J. Zhang, X. Zhou, J. Zhou, H. Zhu, J. Zhu, G. Zuccon, A. Subramanian, J. Zhang, G. Stolovitzky, Z. Kutalik, K. Lage, D. Slonim, J. Saez-Rodriguez, L. Cowen, S. Bergmann, D. Marbach, and T. Consortium. Nature Methods, 16 (9): 843--852 (2019)
DOI: 10.1038/s41592-019-0509-5

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Assessment of network module identification across complex diseasesS. Choobdar, M. Ahsen, J. Crawford, M. Tomasoni, T. Fang, D. Lamparter, J. Lin, B. Hescott, X. Hu, J. Mercer and 168 other author(s). Nature Methods, 16 (9): 843--852 (2019)Network Node Label Acquisition and Tracking.S. Choobdar, F. Silva, and P. Ribeiro. EPIA, volume 7026 of Lecture Notes in Computer Science, page 418-430. Springer, (2011)Event detection in evolving networks.S. Choobdar, P. Ribeiro, and F. Silva. CASoN, page 26-32. IEEE, (2012)MONET: a toolbox integrating top-performing methods for network modularization.M. Tomasoni, S. Gómez, J. Crawford, W. Zhang, S. Choobdar, D. Marbach, and S. Bergmann. Bioinform., 36 (12): 3920-3921 (2020)Robotic clusters: Multi-robot systems as computer clusters: A topological map merging demonstration.A. Marjovi, S. Choobdar, and L. Marques. Robotics Auton. Syst., 60 (9): 1191-1204 (2012)Evolutionary role mining in complex networks by ensemble clustering.S. Choobdar, P. Ribeiro, and F. Silva. SAC, page 1053-1060. ACM, (2017)Motif Mining in Weighted Networks.S. Choobdar, P. Ribeiro, and F. Silva. ICDM Workshops, page 210-217. IEEE Computer Society, (2012)Discovering weighted motifs in gene co-expression networks.S. Choobdar, P. Ribeiro, and F. Silva. SAC, page 10-17. ACM, (2015)Dynamic inference of social roles in information cascades.S. Choobdar, P. Ribeiro, S. Parthasarathy, and F. Silva. Data Min. Knowl. Discov., 29 (5): 1152-1177 (2015)Querying Volatile and Dynamic Networks.S. Choobdar, P. Ribeiro, and F. Silva. Encyclopedia of Social Network Analysis and Mining. 2nd Ed., Springer, (2018)

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Assessment of network module identification across complex diseases

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Assessment of network module identification across complex diseases