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Fast and accurate quantification and differential analysis of transcriptomes.. University of California, Berkeley, USA, (2016)The Lair: a resource for exploratory analysis of published RNA-Seq data., , , , и . BMC Bioinform., (2016)Biclustering by sparse canonical correlation analysis., , и . Quant. Biol., 6 (1): 56-67 (2018)Pseudoalignment for metagenomic read assignment., , , , и . Bioinform., 33 (14): 2082-2088 (2017)TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions., , , , , и . Genome Biol, 14 (4): R36 (апреля 2013)Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks, , , , , , , , , и . Nat. Protocols, 7 (3): 562--578 (марта 2012)Near-optimal RNA-Seq quantification., , , и . CoRR, (2015)Accounting for isoform expression increases power to identify genetic regulation of gene expression., и . PLoS Comput. Biol., (февраля 2024)dotears: Scalable, consistent DAG estimation using observational and interventional data., , , и . CoRR, (2023)Hosting Multiple Simultaneous Applications over an Easy to Administrate, Scalable, Extensible Platform Integrating Diverse Computational Resources., , , и . CSIE (3), стр. 67-71. IEEE Computer Society, (2009)