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glactools: a command-line toolset for the management of genotype likelihoods and allele counts.. Bioinform., 34 (8): 1398-1400 (2018)freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers., , , and . Bioinform., 29 (9): 1208-1209 (2013)gargammel: a sequence simulator for ancient DNA., , , and . Bioinform., 33 (4): 577-579 (2017)Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans, , and . PLOS Genetics, 12 (4): 1-27 (April 2016)Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees., , , , , , and . BMC Bioinform., (2009)Ancient human genomes suggest three ancestral populations for present-day Europeans, , , , , , , , , and 88 other author(s). (2013)137 ancient human genomes from across the Eurasian steppes, , , , , , , , , and 65 other author(s). Nature, 557 (7705): 369--374 (2018)Benchmarking software tools for trimming adapters and merging next-generation sequencing data for ancient DNA., , , , and . Frontiers Bioinform., (May 2023)