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Meta-MEME: motif-based hidden Markov models of protein families.

, , , and . Comput. Appl. Biosci., 13 (4): 397-406 (1997)

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Knowledge--based analysis of microarray gene expression data by using support vector machines, , , , , , , and . Proceedings of the National Academy of Sciences, 97 (1): 262--267 (2000)Protein Family Classification Using Sparse Markov Transducers., , and . ISMB, page 134-145. AAAI, (2000)Family pairwise search with embedded motif models., and . Bioinform., 15 (6): 463-470 (1999)Homology Detection via Family Pairwise Search.. J. Comput. Biol., 5 (3): 479-491 (1998)ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool., , and . Comput. Appl. Biosci., 12 (4): 303-310 (1996)Family-based homology detection via pairwise sequence comparison.. RECOMB, page 94-100. ACM, (1998)MEME, MAST, and Meta-MEME: New Tools for Motif Discovery in Protein Sequences., , , and . Pattern Discovery in Biomolecular Data, Oxford University Press, (1999)Using mixtures of common ancestors for estimating the probabilities of discrete events in biological sequences., , and . ISMB (Supplement of Bioinformatics), page 65-73. (2001)Meta-MEME: motif-based hidden Markov models of protein families., , , and . Comput. Appl. Biosci., 13 (4): 397-406 (1997)Classifying proteins by family using the product of correlated p-values., and . RECOMB, page 10-14. ACM, (1999)