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Probabilistic Inference of Biochemical Reactions in Microbial Communities from Metagenomic Sequences

, , and . PLoS Comput Biol, 9 (3): e1002981+ (Mar 21, 2013)
DOI: 10.1371/journal.pcbi.1002981

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Integrated web service for improving alignment quality based on segments comparison., , , , and . BMC Bioinform., (2004)Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis., and . CoRR, (2015)Automatic detection of subsystem/pathway variants in genome analysis., , , and . ISMB (Supplement of Bioinformatics), page 478-486. (2005)Protein Domain Embeddings for Fast and Accurate Similarity Search., , and . RECOMB, volume 14758 of Lecture Notes in Computer Science, page 421-424. Springer, (2024)A repository of microbial marker genes related to human health and diseases for host phenotype prediction using microbiome data., and . PSB, page 236-247. (2019)A de Bruijn Graph Approach to the Quantification of Closely-Related Genomes in a Microbial Community., , and . J. Comput. Biol., 19 (6): 814-825 (2012)Identification and characterization of accessory genomes in bacterial species based on genome comparison and metagenomic recruitment., , and . BIBM, page 17-24. IEEE Computer Society, (2014)Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins., , and . Pacific Symposium on Biocomputing, page 439-450. World Scientific, (2006)An Orfome Assembly Approach to Metagenomics Sequences Analysis., and . J. Bioinform. Comput. Biol., 7 (3): 455-471 (2009)Flexible structure alignment by chaining aligned fragment pairs allowing twists., and . ECCB, page 246-255. (2003)