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Global Hfq-mediated RNA interactome of nitrogen starved Escherichia coli uncovers a conserved post-transcriptional regulatory axis required for optimal growth recovery

J. McQuail, G. Matera, T. Gräfenhan, T. Bischler, P. Haberkant, F. Stein, J. Vogel, and S. Wigneshweraraj. Nucleic Acids Research, 52 (5): 2323-2339 (Dec 24, 2023)
DOI: 10.1093/nar/gkad1211

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Jörg Vogel

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A primary cell-based in vitro model of the human small intestine reveals host olfactomedin 4 induction in response to Salmonella Typhimurium infectionT. Däullary, F. Imdahl, O. Dietrich, L. Hepp, T. Krammer, C. Fey, W. Neuhaus, M. Metzger, J. Vogel, A. Westermann and 2 other author(s). Gut Microbes, (Mar 20, 2023)Global Hfq-mediated RNA interactome of nitrogen starved Escherichia coli uncovers a conserved post-transcriptional regulatory axis required for optimal growth recoveryJ. McQuail, G. Matera, T. Gräfenhan, T. Bischler, P. Haberkant, F. Stein, J. Vogel, and S. Wigneshweraraj. Nucleic Acids Research, 52 (5): 2323-2339 (Dec 24, 2023)READemption - a tool for the computational analysis of deep-sequencing-based transcriptome data.K. Förstner, J. Vogel, and C. Sharma. Bioinform., 30 (23): 3421-3423 (2014)The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar TyphimuriumA. Westermann, E. Venturini, M. Sellin, K. Förstner, W. Hardt, and J. Vogel. mBio, 10 (1): e02504--18 (February 2019)MAPS integrates regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinTS. Santos, T. Bischler, A. Westermann, and J. Vogel. Cell Reports, 34 (5): 108722 (Feb 2, 2021)Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3′ EndsE. Holmqvist, L. Li, T. Bischler, L. Barquist, and J. Vogel. Molecular Cell, 70 (5): 971--982.e6 (June 2018)The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognitionS. Bauriedl, M. Gerovac, N. Heidrich, T. Bischler, L. Barquist, J. Vogel, and C. Schoen. Nature Communications, 11 (1): 2823-- (Jun 4, 2020)Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA readsG. Prezza, T. Heckel, S. Dietrich, C. Homberger, A. Westermann, and J. Vogel. RNA, (Apr 28, 2020)Brain-to-gut trafficking of alpha-synuclein by CD11c+ cells in a mouse model of Parkinson's diseaseR. McFleder, A. Makhotkina, J. Groh, U. Keber, F. Imdahl, J. Peña Mosca, A. Peteranderl, J. Wu, S. Tabuchi, J. Hoffmann and 9 other author(s). Nature Communications, 14 (1): 7529 (Nov 20, 2023)Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures.S. Hoffmann, C. Otto, S. Kurtz, C. Sharma, P. Khaitovich, J. Vogel, P. Stadler, and J. Hackermüller. PLoS Comput. Biol., (2009)

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Jörg Vogel

Jörg Vogel

Jörg Vogel

Jörg Vogel

Jörg Vogel

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