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Genetic draft, selective interference, and population genetics of rapid adaptation

. (2013)cite arxiv:1302.1148.

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Estimating time of HIV-1 infection from next-generation sequence diversity., , and . PLoS Comput. Biol., (2017)Genetic draft, selective interference, and population genetics of rapid adaptation. Annual Review of Ecology, Evolution, and Systematics, (November 2013)Interference limits resolution of selection pressures from linked neutral diversity, , , and . (2013)cite arxiv:1306.1215.nextflu: real-time tracking of seasonal influenza virus evolution in humans., and . Bioinform., 31 (21): 3546-3548 (2015)FFPopSim: an efficient forward simulation package for the evolution of large populations., and . Bioinform., 28 (24): 3332-3333 (2012)Nextstrain: real-time tracking of pathogen evolution., , , , , , , , and . Bioinform., 34 (23): 4121-4123 (2018)Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens., , , , , , , , , and . J. Open Source Softw., 6 (57): 2906 (2021)Nextclade: clade assignment, mutation calling and quality control for viral genomes., , , and . J. Open Source Softw., 6 (67): 3773 (2021)Genealogies of rapidly adapting populations, and . Proceedings of the National Academy of Sciences, 110 (2): 437-442 (2013)TreeKnit: Inferring ancestral reassortment graphs of influenza viruses., , and . PLoS Comput. Biol., (2022)