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Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization., , , , , , and . Nucleic Acids Res., 48 (Webserver-Issue): W177-W184 (2020)pyGenomeTracks: reproducible plots for multivariate genomic datasets., , , , , , , and . Bioinform., 37 (3): 422-423 (2021)Predicting transcription factor affinities to DNA from a biophysical model., , , and . Bioinform., 23 (2): 134-141 (2007)PASTAA: identifying transcription factors associated with sets of co-regulated genes., , , , and . Bioinform., 25 (4): 435-442 (2009)Parkour LIMS: high-quality sample preparation in next generation sequencing., , , , , and . Bioinform., 35 (8): 1422-1424 (2019)Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome., , and . Regulatory Genomics, volume 3318 of Lecture Notes in Computer Science, page 14-21. Springer, (2004)Prioritization of gene regulatory interactions from large-scale modules in yeast., , , and . BMC Bioinform., (2008)snakePipes: facilitating flexible, scalable and integrative epigenomic analysis., , , , , , , , and . Bioinform., 35 (22): 4757-4759 (2019)deepTools: a flexible platform for exploring deep-sequencing data., , , , and . Nucleic Acids Res., 42 (Webserver-Issue): 187-191 (2014)Robustness and network evolution—an entropic principle, and . Physica A: Statistical Mechanics and its Applications, 346 (3-4): 682--696 (February 2005)