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Literature mining for the biologist: from information retrieval to biological discovery

, , and . Nature Reviews Genetics, (2006)

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Extraction of Transcript Diversity from Scientific Literature., , , and . PLoS Comput. Biol., (2005)BioStar: An Online Question & Answer Resource for the Bioinformatics Community., , , , , , , , , and 1 other author(s). PLoS Comput. Biol., (2011)eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations., , , , , , , , , and 1 other author(s). Nucleic Acids Res., 38 (Database-Issue): 190-195 (2010)The SIDER database of drugs and side effects., , , and . Nucleic Acids Res., 44 (Database-Issue): 1075-1079 (2016)eggNOG v4.0: nested orthology inference across 3686 organisms., , , , , , , , , and 3 other author(s). Nucleic Acids Res., 42 (Database-Issue): 231-239 (2014)STRING: known and predicted protein-protein associations, integrated and transferred across organisms., , , , , , , , and . Nucleic Acids Res., 33 (Database-Issue): 433-437 (2005)STITCH 3: zooming in on protein-chemical interactions., , , , , and . Nucleic Acids Res., 40 (Database-Issue): 876-880 (2012)RAIN: RNA-protein Association and Interaction Networks., , , , , , , , , and 1 other author(s). Database J. Biol. Databases Curation, (2017)eggNOG 6.0: enabling comparative genomics across 12 535 organisms., , , , , , , , , and 3 other author(s). Nucleic Acids Res., 51 (D1): 389-394 (January 2023)miRandola 2017: a curated knowledge base of non-invasive biomarkers., , , , , , , , , and 9 other author(s). Nucleic Acids Res., 46 (Database-Issue): D354-D359 (2018)