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Inferring Functional Pathways from Multi-Perturbation Data., , and . ISMB (Supplement of Bioinformatics), page 539-546. (2006)Improved network-based identification of protein orthologs., , and . ECCB, page 200-206. (2008)Mapping single-cell data to reference atlases by transfer learning, , , , , , , , , and 1 other author(s). Nature Biotechnology, 40 (1): 121--130 (2022)Prediction of Phenotype Information from Genotype Data., , , , , and . Commun. Inf. Syst., 10 (2): 99-114 (2010)Impulse Control: Temporal Dynamics in Gene Transcription, and . Cell, 144 (6): 886 - 896 (2011)Connectivity problems on heterogeneous graphs., , , and . Algorithms Mol. Biol., 14 (1): 5:1-5:17 (2019)Network-Free Inference of Knockout Effects in Yeast., , , and . PLoS Comput. Biol., (2010)A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data., , , , , , and . Bioinform., 23 (2): 91-98 (2007)Interpretable factor models of single-cell RNA-seq via variational autoencoders., , , and . Bioinform., 36 (11): 3418-3421 (2020)Identifying Systematic Variation at the Single-Cell Level by Leveraging Low-Resolution Population-Level Data., , and . RECOMB, volume 13278 of Lecture Notes in Computer Science, page 371. Springer, (2022)