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Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features, , and . Nucl. Acids Res., (December 2008)PfamAlyzer: domain-centric homology search., and . Bioinform., 23 (24): 3382-3383 (2007)A comparison of sequence and structure protein domain families as a basis for structural genomics., and . Bioinform., 15 (6): 480-500 (1999)Optimal Sparsity Criteria for Network Inference., , , and . J. Comput. Biol., 20 (5): 398-408 (2013)NIFAS: visual analysis of domain evolution in proteins., and . Bioinform., 17 (4): 343-348 (2001)Computational antisense oligo prediction with a neural network model., and . Bioinform., 18 (12): 1567-1575 (2002)Scoredist: A simple and robust protein sequence distance estimator., and . BMC Bioinform., (2005)Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER., and . BMC Bioinform., (2005)InParanoid 7: new algorithms and tools for eukaryotic orthology analysis., , , , , , , and . Nucleic Acids Res., 38 (Database-Issue): 196-203 (2010)Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment., and . Nucleic Acids Res., 34 (Web-Server-Issue): 596-599 (2006)