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DOGMA: domain-based transcriptome and proteome quality assessment., , , and . Bioinform., 32 (17): 2577-2581 (2016)Domain similarity based orthology detection., , , and . BMC Bioinform., (2015)STRIKE: evaluation of protein MSAs using a single 3D structure., , , and . Bioinform., 27 (24): 3385-3391 (2011)SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments., , , , , , and . Nucleic Acids Res., 42 (Webserver-Issue): 356-360 (2014)Epistasis as the primary factor in molecular evolution., , , , and . Nature, 490 (7421): 535-538 (2012)Upcoming challenges for multiple sequence alignment methods in the high-throughput era., and . Bioinform., 25 (19): 2455-2465 (2009)MDAT- Aligning multiple domain arrangements., , and . BMC Bioinform., (2015)Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package., , , , and . Bioinform., 29 (9): 1112-1119 (2013)DOGMA: a web server for proteome and transcriptome quality assessment., , and . Nucleic Acids Res., 47 (Webserver-Issue): W507-W510 (2019)Multiple sequence alignment modeling: methods and applications., , , , , , and . Briefings Bioinform., 17 (6): 1009-1023 (2016)