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Brownian dynamics simulation of diffusioninfluenced bimolecular reactions Brownian dynamics simulation of diffusion-influenced bimolecular reactions, , и . (1984)Channeling by Proximity: The Catalytic Advantages of Active Site Colocalization Using Brownian Dynamics, , , и . J. Phys. Chem. Lett., (2010)Finite element simulations of acetylcholine diffusion in neuromuscular junctions., , , , , и . Biophys. J., 84 (4): 2234--2241 (апреля 2003)Finite element solution of the steady-state Smoluchowski equation for rate constant calculations., , , , , и . Biophys. J., 86 (4): 2017--2029 (апреля 2004)How To Deal with Multiple Binding Poses in Alchemical Relative Protein -- Ligand Binding Free Energy Calculations, , , , , и . Journal of Chemical Theory and Computation, (2015)Developing a Dynamic Pharmacophore Model for HIV-1 Integrase, , , , , , , и . Journal of Medicinal Chemistry, 43 (11): 2100-2114 (2000)PMID: 10841789.POVME: An algorithm for measuring binding-pocket volumes, , и . Journal of Molecular Graphics and Modelling, 29 (5): 773 - 776 (2011)BINANA: A novel algorithm for ligand-binding characterization, и . Journal of Molecular Graphics and Modelling, 29 (6): 888 - 893 (2011)Accelerated molecular dynamics: A promising and efficient simulation method for biomolecules, , и . The Journal of Chemical Physics, 120 (24): 11919-11929 (2004)Tetrameric mouse acetylcholinesterase: continuum diffusion rate calculations by solving the steady-state Smoluchowski equation using finite element methods., , , , , , , , , и . Biophys. J., 88 (3): 1659--1665 (марта 2005)