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gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data.

, , , , , and . BMC Bioinform., 21-S (1): 413 (2020)

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MALVIRUS: an integrated application for viral variant analysis., , , , , and . BMC Bioinform., 22-S (15): 625 (November 2021)Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data., , , , and . J. Comput. Biol., 30 (4): 469-491 (April 2023)Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses., , , , , , , and . Bioinform., 37 (3): 326-333 (2021)gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data., , , , , and . BMC Bioinform., 21-S (1): 413 (2020)Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data., , , , and . CoRR, (2022)Triplet-based similarity score for fully multilabeled trees with poly-occurring labels., , , , , and . Bioinform., 37 (2): 178-184 (2021)Beyond Perfect Phylogeny: Multisample Phylogeny Reconstruction via ILP., , , and . BCB, page 1-10. ACM, (2017)Clustering SARS-CoV-2 Variants from Raw High-Throughput Sequencing Reads Data., , , , and . ICCABS, volume 13254 of Lecture Notes in Computer Science, page 133-148. Springer International Publishing, (2021)Effective Clustering for Single Cell Sequencing Cancer Data., , , and . BCB, page 437-446. ACM, (2019)Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach., , , and . IEEE ACM Trans. Comput. Biol. Bioinform., 16 (5): 1410-1423 (2019)