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PROTERAN: animated terrain evolution for visual analysis of patterns in protein folding trajectory.

, , , and . Bioinform., 23 (1): 99-106 (2007)

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A computationally inexpensive modification of the point dipole electrostatic polarization model for molecular simulations., , and . J. Comput. Chem., 24 (3): 267-276 (2003)Protein folding trajectory analysis using patterned clusters., , and . APBC, page 95-104. Imperial College Press, London, (2005)Free energy landscape of protein folding in water: Explicit vs. implicit solvent. Proteins: Structure, Function, and Genetics, (November 2003)Combinatorial Pattern Discovery Approach for the Folding Trajectory Analysis of a β-Hairpin., and . PLoS Comput. Biol., (2005)Free energy simulations reveal a double mutant avian H5N1 virus hemagglutinin with altered receptor binding specificity., , , and . J. Comput. Chem., 30 (11): 1654-1663 (2009)Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L., , , , , , , , , and 4 other author(s). International Conference on Computational Science (2), volume 3992 of Lecture Notes in Computer Science, page 846-854. Springer, (2006)Detecting Native Protein Folds Among Large Decoy Sets with Hydrophobic Moment Profiling., and . Pacific Symposium on Biocomputing, page 673-684. (2002)CASTELO: Clustered Atom Subtypes aidEd Lead Optimization - a combined machine learning and molecular modeling method., , , , , and . CoRR, (2020)PROTERAN: animated terrain evolution for visual analysis of patterns in protein folding trajectory., , , and . Bioinform., 23 (1): 99-106 (2007)Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L., , , , , and . IPDPS, IEEE, (2006)