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Programming biological models in Python using PySB., , , and . Molecular systems biology, 9 (1): n/a (Jan 1, 2013)Re-curation and rational enrichment of knowledge graphs in Biological Expression Language., , , , , , , , , and 1 other author(s). Database J. Biol. Databases Curation, (2019)New approaches to modeling complex biochemistry, and . Nature Methods, 8 (2): 130--131 (February 2011)Eidos, INDRA, & Delphi: From Free Text to Executable Causal Models., , , , , , , , , and 7 other author(s). NAACL-HLT (Demonstrations), page 42-47. Association for Computational Linguistics, (2019)Adeft: Acromine-based Disambiguation of Entities from Text with applications to the biomedical literature., , and . J. Open Source Softw., 5 (45): 1708 (2020)FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining., , and . BMC Bioinform., 19 (1): 248:1-248:14 (2018)STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs., , , , , , , , and . Bioinform., 38 (6): 1648-1656 (2022)ProtSTonKGs: A Sophisticated Transformer Trained on Protein Sequences, Text, and Knowledge Graphs., , , , , , and . SWAT4HCLS, volume 3127 of CEUR Workshop Proceedings, page 103-107. CEUR-WS.org, (2022)INDRA-IPM: interactive pathway modeling using natural language with automated assembly., , , and . Bioinform., 35 (21): 4501-4503 (2019)