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The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

, , , , , , , , , and . Nucleic Acids Res., 33 (Database-Issue): 71-74 (2005)

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TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets., , , , , , , , , and 2 other author(s). Bioinform., 19 (5): 651-652 (2003)Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks, , , , , , , , , and . Nat. Protocols, 7 (3): 562--578 (March 2012)Ballgown bridges the gap between transcriptome assembly and expression analysis, , , , , and . Nat Biotech, 33 (3): 243--246 (March 2015)TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions., , , , , and . Genome Biol, 14 (4): R36 (April 2013)Gene Recovery of Two Genome-Filtration Sequencing Techniques When Applied to the Maize Genome., , , , , , , , and . CSB, page 594-595. IEEE Computer Society, (2004)The TIGR Gene Indices: reconstruction and representation of expressed gene sequences., , , , and . Nucleic Acids Res., 28 (1): 141-145 (2000)Improved transcriptome assembly using a hybrid of long and short reads with StringTie., , , and . PLoS Comput. Biol., (2022)Detection of Lineage-Specific Evolutionary Changes among Primate Species., , and . BMC Bioinform., (2011)The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes., , , , , , , , , and . Nucleic Acids Res., 33 (Database-Issue): 71-74 (2005)The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species., , , , , , , , , and . Nucleic Acids Res., 29 (1): 159-164 (2001)