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Chimera: a Bioconductor package for secondary analysis of fusion products., , , , , , , and . Bioinform., 30 (24): 3556-3557 (2014)Overcoming the lack of kinetic information in biochemical reactions networks., , , , , and . SIGMETRICS Perform. Evaluation Rev., 44 (4): 91-102 (2017)Dynamic Simulations of Kidney Exchanges., , , and . OR, page 539-544. Springer, (2010)Gradient-Based Variable Ordering of Decision Diagrams for Systems with Structural Units., , and . ATVA, volume 10482 of Lecture Notes in Computer Science, page 184-200. Springer, (2017)Integrating Petri Nets and Flux Balance Methods in Computational Biology Models: a Methodological and Computational Practice., , , , , , , , , and . Fundam. Informaticae, 171 (1-4): 367-392 (2020)SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer., , , , , , and . Bioinform., 34 (5): 871-872 (2018)Efficient simulation of stochastic well-formed nets through symmetry exploitation., and . WSC, page 296:1-296:13. WSC, (2012)From Compositional Petri Net Modeling to Macro and Micro Simulation by Means of Stochastic Simulation and Agent-Based Models., , , , , and . ACM Trans. Model. Perform. Evaluation Comput. Syst., 9 (1): 1:1-1:30 (March 2024)GRAPES-DD: exploiting decision diagrams for index-driven search in biological graph databases., , , and . BMC Bioinform., 22 (1): 209 (2021)MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems., , , , and . CIKM, page 5259-5262. ACM, (2023)