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The effect of box shape on the dynamic properties of proteins simulated under periodic boundary conditions., and . J. Comput. Chem., 27 (3): 316-325 (2006)Asymmetric CorA Gating Mechanism as Observed by Molecular Dynamics Simulations., , , , and . J. Chem. Inf. Model., 61 (5): 2407-2417 (2021)Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations, , , , and . Journal of Chemical Theory and Computation, 11 (5): 2144-2155 (2015)PMID: 26574417.A method to obtain a near-minimal-volume molecular simulation of a macromolecule, using periodic boundary conditions and rotational constraints., , and . J. Comput. Chem., 25 (8): 1037-1046 (2004)eTOX ALLIES: an automated pipeLine for linear interaction energy-based simulations., , , , , , , and . J. Cheminformatics, 9 (1): 58:1-58:13 (2017)Dynamic Cholesterol-Conditioned Dimerization of the G Protein Coupled Chemokine Receptor Type 4., , , , and . PLoS Comput. Biol., (2016)Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models, , , , and . Journal of Chemical Theory and Computation, 10 (2): 676-690 (2014)PMID: 26580045.Unbreaking Assemblies in Molecular Simulations with Periodic Boundaries., , and . J. Chem. Inf. Model., 63 (11): 3448-3452 (June 2023)General Protocol for Constructing Molecular Models of Nanodiscs., , , , , , and . J. Chem. Inf. Model., 61 (6): 2869-2883 (2021)Dopamine transporter oligomerization involves the scaffold domain, but spares the bundle domain., , , , , and . PLoS Comput. Biol., (2018)