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Swift: primary data analysis for the Illumina Solexa sequencing platform., , , , , , , and . Bioinform., 25 (17): 2194-2199 (2009)KRLMM: an adaptive genotype calling method for common and low frequency variants., , , , and . BMC Bioinform., (2014)Statistical issues in the analysis of Illumina data., , , , and . BMC Bioinform., (2008)Glimma: interactive graphics for gene expression analysis., , , , , and . Bioinform., 33 (13): 2050-2052 (2017)High-resolution transcription atlas of the mitotic cell cycle in budding yeast., , , , , , , and . Genome biology, 11 (3): R24+ (2010)beadarray: R classes and methods for Illumina bead-based data., , , and . Bioinform., 23 (16): 2183-2184 (2007)A comparison of background correction methods for two-colour microarrays., , , , , , and . Bioinform., 23 (20): 2700-2707 (2007)R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips., , , , and . Bioinform., 25 (19): 2621-2623 (2009)Empirical array quality weights in the analysis of microarray data., , , , , , and . BMC Bioinform., (2006)illuminaio: An open source IDAT parsing tool for Illumina microarrays., , , , and . F1000Research, (2013)