This protocol provides detailed instructions on Quality Control, EWAS, and CpG island signature discovery with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip data. R package minfi and caret was used in this analysis.
C. Abal-Kassim, and M. Frédéric. Distributed Computing and Applications to Business, Engineering and Science (DCABES), 2014 13th International Symposium on, page 46-50. (November 2014)