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Xwalk: computing and visualizing distances in cross-linking experiments.
Abdullah Kahraman, Lars Malmström, and Ruedi Aebersold Bioinformatics 27(15):2163-2164 (2011)
to dblp by dblp on Aug 8, 2011, 12:00 AM
URL | BibTeX
The protein information and property explorer: an easy-to-use, rich-client web application for the management and functional analysis of proteomic data.
Hector Ramos, P. Shannon, and Ruedi Aebersold Bioinformatics 24(18):2110-2111 (2008)
to dblp by dblp on Mar 27, 2011, 12:00 AM
URL | BibTeX
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
Mi-Youn K. Brusniak, Bernd Bodenmiller, David Campbell, Kelly Cooke, James Eddes, Andrew Garbutt, Hollis Lau, Simon Letarte, Lukas N. Mueller, Vagisha Sharma, Olga Vitek, Ning Zhang, Ruedi Aebersold, and Julian D. Watts BMC Bioinformatics (2008)
to dblp by dblp and 2 other users on Mar 27, 2011, 12:00 AM
URL | BibTeX
ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry.
Mi-Youn K. Brusniak, Sung-Tat Kwok, Mark Christiansen, David Campbell, Lukas Reiter, Paola Picotti, Ulrike Kusebauch, Hector Ramos, Eric W. Deutsch, Jingchun Chen, Robert L. Moritz, and Ruedi Aebersold BMC Bioinformatics (2011)
to dblp by dblp on Mar 27, 2011, 12:00 AM
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Signal maps for mass spectrometry-based comparative proteomics
Prakash, P Mallick, J Whiteaker, HD Zhang, A Paulovich, M Flory, H Lee, R Aebersold, and B Schwikowski Molecular \& Cellular Proteomics 5(3):423-432 (March 2006)
by hkayabilisim on Jan 17, 2011, 12:52 PM
DOI | BibTeX
Proteome coverage prediction with infinite Markov models
Manfred Claassen, Ruedi Aebersold, and Joachim M. Buhmann Bioinformatics 25(12):154-160 (2009)
to C2 by for916 and 1 other user on Oct 4, 2010, 6:59 PM
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Proteome Coverage Prediction for Integrated Proteomics Datasets.
Manfred Claassen, Ruedi Aebersold, and Joachim M. Buhmann RECOMB, volume 6044 of Lecture Notes in Computer Science, page 96-109. Springer, (2010)
to dblp by dblp on Jul 21, 2010, 4:01 PM
URL | BibTeX
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
Mi-Youn Brusniak, Bernd Bodenmiller, David Campbell, Kelly Cooke, James Eddes, Andrew Garbutt, Hollis Lau, Simon Letarte, Lukas Mueller, Vagisha Sharma, Olga Vitek, Ning Zhang, Ruedi Aebersold, and Julian Watts BMC Bioinformatics 9(1):542 (2008)
to biomarker proteomics by jhandcock and 2 other users on Jan 27, 2010, 2:38 AM
DOI | BibTeX
Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics
Paola Picotti, Bernd Bodenmiller, Lukas N. Mueller, Bruno Domon, and Ruedi Aebersold Cell 138(4):795--806 (August 2009)
to proteomics by jhandcock on Jan 27, 2010, 12:57 AM
BibTeX
Dürfen wir Atommüll heute schon endlagern? : pro & contra
Jan Richard Weber, and Michael Aebersold ZEIT Wissen (2009)
to Atommüll Endlagerung Radioaktiver_Abfall by powidl on Oct 19, 2009, 8:35 AM
BibTeX
Interpretation of shotgun proteomic data: the protein inference problem
A I Nesvizhskii, and R Aebersold Mol Cell Proteomics 4(10):1419-1440 (October 2005)
by kcha193 on Oct 15, 2009, 2:37 AM
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Computational prediction of proteotypic peptides for quantitative proteomics
Parag Mallick, Markus Schirle, Sharon S Chen, Mark R Flory, Hookeun Lee, Daniel Martin, Jeffrey Ranish, Brian Raught, Robert Schmitt, Thilo Werner, Bernhard Kuster, and Ruedi Aebersold Nature Biotechnology 25(1):125--131 (February 2007)
to peptide prediction proteomics proteotypic by jhandcock on Oct 7, 2009, 7:28 PM
BibTeX
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
Desiere, E W Deutsch, A I Nesvizhskii, P Mallick, N L King, J K Eng, A Aderem, R Boyle, E Brunner, S Donohoe, N Fausto, E Hafen, L Hood, M G Katze, K A Kennedy, F Kregenow, H Lee, B Lin, D Martin, J A Ranish, D J Rawlings, L E Samelson, Y Shiio, J D Watts, B Wollscheid, M E Wright, W Yan, L Yang, E C Yi, H Zhang, and R Aebersold Genome Biology (2005)
to genomics ms peptideatlas proteomics by jhandcock on Sep 30, 2009, 7:15 AM
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PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
E W Deutsch, H Lam, and R Aebersold EMBO Reports 9(5):429-434 (May 2008)
to ms peptideatlas proteomics targeted by jhandcock and 1 other user on Sep 26, 2009, 1:04 AM
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The PeptideAtlas project
Desiere, E W Deutsch, N L King, A I Nesvizhskii, P Mallick, J Eng, S Chen, J Eddes, S N Loevenich, and R Aebersold Nucleic Acids Research 34(Database issue):655-658 (January 2006)
to ms peptideatlas by jhandcock and 1 other user on Sep 26, 2009, 1:03 AM
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Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring
Lange, J A Malmström, J Didion, N L King, B P Johansson, J Schäfer, J Rameseder, C H Wong, E W Deutsch, M Y Brusniak, P Bühlmann, L Björck, B Domon, and R Aebersold Molecular \& Cellular Proteomics 7(8):1489-1500 (August 2008)
to ms peptideatlas proteomics targeted by jhandcock on Sep 26, 2009, 1:02 AM
DOI | BibTeX
Parallel, quantitative measurement of protein binding to a 120-element double-stranded DNA array in real time using surface plasmon resonance microscopy
J S Shumaker-Parry, R Aebersold, and C T Campbell Anal Chem 76(7):2071-2082 (April 2004)
to array factor spr sprimimbpaper transcription by clausted on Sep 1, 2009, 5:21 AM
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The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.
Sandra N. Loevenich, Erich Brunner, Nichole L. King, Eric W. Deutsch, Stephen E. Stein, Ruedi Aebersold, and Ernst Hafen BMC Bioinformatics (2009)
to dblp by dblp on Aug 21, 2009, 12:00 AM
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Prequips - an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.
Nils Gehlenborg, Wei Yan, Inyoul Y. Lee, Hyuntae Yoo, Kay Nieselt, Daehee Hwang, Ruedi Aebersold, and Leroy Hood Bioinformatics 25(5):682-683 (2009)
to dblp by dblp on Jun 22, 2009, 12:00 AM
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Proteome coverage prediction with infinite Markov models.
Manfred Claassen, Ruedi Aebersold, and Joachim M. Buhmann Bioinformatics (2009)
to dblp by dblp and 1 other user on Jun 22, 2009, 12:00 AM
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